PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Ppat18G0002870.2 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
Ppat18G0002870.3 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
Ppat18G0004410.1 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat18G0004410.2 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat19G0009340.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat19G0009340.2 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat19G0009340.3 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat19G0009340.4 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat19G0009340.5 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat19G0009340.6 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat20G0010000.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Ppat20G0010010.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Ppat21G0000590.1 Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
Ppat21G0000590.2 Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
Ppat21G0000590.3 Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
Ppat21G0000590.4 Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
Ppat21G0000590.5 Flavonoid F3H low borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
Ppat25G0002150.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0002150.2 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0002150.3 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0002150.4 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0002150.5 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0004300.1 Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0004300.2 Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0004300.3 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0004300.4 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0005470.1 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat25G0005470.2 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Ppat26G0006560.1 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Ppat26G0006560.2 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Ppat27G0002400.1 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat27G0002400.2 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Ppat27G0002400.3 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ