Physcomitrella patens (physcomitrella_patens)
Imported from atlas release summary for Physcomitrella patens.
1885
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1885
Candidate Genes
BAHD
8.13%
4CL
7.14%
POD
6.25%
NMT
5.81%
C4H
4.52%
C3'H/CYP98A
4.37%
STR
3.58%
CYP76
2.95%
Other Families
57.24%
More Families (95)
F3H
133
2.91%
CODM/T6ODM
124
2.71%
IFR
102
2.23%
IFS
101
2.21%
GS
96
2.1%
BR6OX2/CYP85A2
92
2.01%
T3O
88
1.92%
CYP71
77
1.68%
F3'H/CYP75B
76
1.66%
DWF4/CYP90B1
70
1.53%
PAL
63
1.38%
SMT1/SMT2/SMT3
63
1.38%
UFGT
62
1.35%
PYKS
61
1.33%
CSE
60
1.31%
UGT
58
1.27%
CAD
57
1.25%
TRI/TRII
53
1.16%
7DLGT
50
1.09%
RAS
49
1.07%
SGD
43
0.94%
PMT
42
0.92%
CNMT
41
0.9%
CAS
41
0.9%
HCT
39
0.85%
IO
34
0.74%
T16H
33
0.72%
CHS
33
0.72%
FNS
31
0.68%
MVK
31
0.68%
SQS/FDFT1
30
0.66%
SLS
29
0.63%
H6H
29
0.63%
MPO
29
0.63%
COR
28
0.61%
CPD/CYP90A1
26
0.57%
LAC
24
0.52%
8HGO
22
0.48%
G8O/G8H
21
0.46%
F3'5'H/CYP75A
20
0.44%
ANR
19
0.42%
COMT
19
0.42%
DFR
18
0.39%
CCR
18
0.39%
CPR
18
0.39%
TPS
17
0.37%
DWF5
16
0.35%
GGPPS
15
0.33%
AACT
15
0.33%
CHI
13
0.28%
MVD
13
0.28%
DXS
12
0.26%
MCT/IspD
12
0.26%
NCS
11
0.24%
GES
11
0.24%
TAT
11
0.24%
CYP90D1
10
0.22%
7DLH
9
0.2%
XMT_MXMT_DXMT
9
0.2%
FLS
9
0.2%
CYP51G1
9
0.2%
DXR
9
0.2%
TDC
8
0.17%
ROT3/CYP90C1
8
0.17%
DET2
8
0.17%
FPPS
8
0.17%
MDS/IspF
8
0.17%
TYDC_DDC
7
0.15%
16OMT
7
0.15%
ANS/LDOX
7
0.15%
CCoAOMT
7
0.15%
DWF1
7
0.15%
SMO1/SMO2
7
0.15%
HDS/IspG
7
0.15%
CMK/IspE
7
0.15%
HMGR
6
0.13%
HMGS
6
0.13%
HDR/IspH
6
0.13%
ADC
5
0.11%
CYP80B1
5
0.11%
BBE
4
0.09%
LAMT
4
0.09%
HPPR
4
0.09%
SQE
4
0.09%
CPI1
4
0.09%
HYD1
3
0.07%
FK
3
0.07%
PMK
3
0.07%
CYP719
2
0.04%
ISY
2
0.04%
F5H/CYP84A
2
0.04%
BR6OX1/CYP85A1
2
0.04%
DWF7
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 19 | BAHD (308) | View species results |
| Phenylpropanoid pathway | 489 | 12 | POD (277) | View species results |
| Alkaloid pathway | 391 | 17 | NMT (72) | View species results |
| Flavonoid pathway | 162 | 9 | UFGT (46) | View species results |
| Rosmarinic acid pathway | 152 | 7 | C4H (49) | View species results |
| Steroid pathway | 135 | 13 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1256 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 460 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ppat02G0017600.6 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat02G0017600.7 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat02G0017600.8 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat02G0017600.9 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat03G0001470.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0001470.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0001470.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0001470.4 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0001470.5 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0001650.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Ppat03G0001650.2 | Alkaloid | NMT | low | borderline | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Ppat03G0001660.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Ppat03G0006490.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0006490.2 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0006490.3 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0006490.4 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0007910.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ppat03G0007910.2 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ppat03G0007910.3 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ppat03G0007970.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0007970.2 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0007970.3 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0011040.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.4 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.5 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.6 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.7 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.8 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat04G0000850.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat04G0000850.2 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat04G0000850.3 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ppat04G0000850.4 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ppat04G0000850.5 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat04G0004420.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004420.2 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004420.3 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004420.4 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004950.1 | Alkaloid | NMT | medium | pass | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Ppat04G0011690.1 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Ppat04G0011690.2 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Ppat04G0011690.3 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Ppat04G0014010.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.10 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.11 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.12 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.13 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.3 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |