PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
Ppat01G0000840.1 Alkaloid T3O medium borderline
Ppat01G0000840.2 Alkaloid T3O medium borderline
Ppat01G0005570.1 Alkaloid T3O medium pass
Ppat01G0005570.2 Alkaloid T3O medium pass
Ppat01G0005570.3 Alkaloid T3O medium pass
Ppat01G0018910.1 Alkaloid T3O medium borderline
Ppat01G0018910.2 Alkaloid T3O medium borderline
Ppat02G0009180.1 Alkaloid T3O medium pass
Ppat02G0009180.2 Alkaloid T3O medium pass
Ppat02G0011970.1 Alkaloid T3O medium borderline
Ppat02G0011970.2 Alkaloid T3O medium borderline
Ppat02G0011970.3 Alkaloid T3O medium borderline
Ppat02G0011970.4 Alkaloid T3O medium borderline
Ppat02G0011970.5 Alkaloid T3O medium borderline
Ppat02G0013530.1 Alkaloid T3O medium pass
Ppat02G0013530.2 Alkaloid T3O medium pass
Ppat02G0013530.3 Alkaloid T3O medium pass
Ppat02G0015030.1 Alkaloid T3O medium borderline
Ppat02G0015030.2 Alkaloid T3O medium borderline
Ppat02G0018290.1 Alkaloid T3O medium borderline
Ppat02G0018290.2 Alkaloid T3O medium borderline
Ppat03G0012250.1 Alkaloid T3O medium borderline
Ppat03G0012250.2 Alkaloid T3O medium borderline
Ppat04G0014250.1 Alkaloid T3O medium borderline
Ppat04G0014250.2 Alkaloid T3O medium borderline
Ppat05G0012510.1 Alkaloid T3O medium pass
Ppat05G0012510.2 Alkaloid T3O medium pass
Ppat06G0000630.1 Alkaloid T3O low borderline
Ppat06G0000630.2 Alkaloid T3O low borderline
Ppat06G0000630.3 Alkaloid T3O low borderline
Ppat07G0003600.1 Alkaloid T3O low borderline
Ppat07G0003600.2 Alkaloid T3O low borderline
Ppat07G0003600.3 Alkaloid T3O low borderline
Ppat08G0009790.1 Alkaloid T3O medium borderline
Ppat08G0009790.2 Alkaloid T3O medium borderline
Ppat08G0009790.3 Alkaloid T3O medium borderline
Ppat08G0009790.4 Alkaloid T3O medium borderline
Ppat11G0003350.1 Alkaloid T3O medium borderline
Ppat11G0003350.2 Alkaloid T3O medium borderline
Ppat11G0012930.1 Alkaloid T3O low borderline
Ppat12G0002330.1 Alkaloid T3O medium pass
Ppat12G0002330.2 Alkaloid T3O medium pass
Ppat13G0010630.1 Alkaloid T3O low borderline
Ppat13G0010630.2 Alkaloid T3O low borderline
Ppat13G0010630.3 Alkaloid T3O low borderline
Ppat13G0010630.4 Alkaloid T3O low borderline
Ppat17G0006270.1 Alkaloid T3O medium borderline
Ppat17G0006270.2 Alkaloid T3O medium borderline
Ppat17G0006270.3 Alkaloid T3O medium borderline
Ppat17G0010910.1 Alkaloid T3O low borderline