PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Ppat25G0005470.1 Alkaloid H6H medium borderline
Ppat25G0005470.2 Alkaloid H6H medium borderline
Ppat27G0002380.1 Alkaloid H6H medium pass
Ppat27G0002380.2 Alkaloid H6H medium pass
Ppat27G0002380.3 Alkaloid H6H medium pass
Ppat01G0018600.1 Alkaloid IO medium pass
Ppat01G0018600.2 Alkaloid IO medium pass
Ppat03G0008200.1 Alkaloid IO medium borderline
Ppat03G0008200.2 Alkaloid IO medium borderline
Ppat05G0001630.1 Alkaloid IO low borderline
Ppat05G0001630.2 Alkaloid IO low borderline
Ppat05G0006020.1 Alkaloid IO low borderline
Ppat06G0008960.1 Alkaloid IO medium borderline
Ppat06G0008960.2 Alkaloid IO medium borderline
Ppat06G0008960.3 Alkaloid IO medium borderline
Ppat06G0008960.4 Alkaloid IO medium borderline
Ppat06G0008960.5 Alkaloid IO medium borderline
Ppat07G0008440.1 Alkaloid IO medium borderline
Ppat07G0008440.2 Alkaloid IO medium borderline
Ppat07G0010910.1 Alkaloid IO medium borderline
Ppat07G0010910.2 Alkaloid IO medium borderline
Ppat11G0000180.1 Alkaloid IO medium borderline
Ppat11G0000180.2 Alkaloid IO medium borderline
Ppat11G0000180.3 Alkaloid IO medium borderline
Ppat11G0000180.4 Alkaloid IO medium borderline
Ppat11G0003070.1 Alkaloid IO medium borderline
Ppat11G0003070.2 Alkaloid IO medium borderline
Ppat12G0003460.1 Alkaloid IO medium borderline
Ppat12G0003460.2 Alkaloid IO medium borderline
Ppat16G0002890.1 Alkaloid IO medium borderline
Ppat16G0010960.1 Alkaloid IO medium borderline
Ppat16G0010960.2 Alkaloid IO medium borderline
Ppat17G0010440.1 Alkaloid IO medium borderline
Ppat17G0010440.2 Alkaloid IO medium borderline
Ppat23G0002270.5 Alkaloid IO medium borderline
Ppat23G0009960.1 Alkaloid IO medium borderline
Ppat23G0009960.2 Alkaloid IO medium borderline
Ppat24G0008030.1 Alkaloid IO medium borderline
Ppat24G0008030.2 Alkaloid IO medium borderline
Ppat22G0003110.1 Alkaloid ISY medium pass
Ppat22G0003110.2 Alkaloid ISY medium pass
Ppat03G0011110.1 Alkaloid LAMT low borderline
Ppat05G0001590.1 Alkaloid LAMT medium borderline
Ppat16G0010580.1 Alkaloid LAMT medium borderline
Ppat16G0010580.2 Alkaloid LAMT medium borderline
Ppat08G0006580.1 Alkaloid MPO medium pass
Ppat08G0006580.2 Alkaloid MPO medium pass
Ppat14G0007260.1 Alkaloid MPO medium pass
Ppat14G0007260.2 Alkaloid MPO medium pass
Ppat17G0002310.1 Alkaloid MPO high pass