PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Ppat16G0002700.3 Flavonoid IFR low borderline
Ppat16G0002700.6 Flavonoid IFR low borderline
Ppat16G0002700.7 Flavonoid IFR low borderline
Ppat16G0005700.1 Flavonoid IFR low borderline
Ppat16G0005700.2 Flavonoid IFR low borderline
Ppat17G0003110.1 Flavonoid IFR low borderline
Ppat17G0003110.2 Flavonoid IFR low borderline
Ppat17G0004190.2 Flavonoid IFR medium borderline
Ppat17G0004190.3 Flavonoid IFR medium borderline
Ppat18G0001760.1 Flavonoid IFR low borderline
Ppat18G0001760.2 Flavonoid IFR low borderline
Ppat20G0002030.1 Flavonoid IFR low borderline
Ppat20G0002030.2 Flavonoid IFR low borderline
Ppat20G0002030.3 Flavonoid IFR low borderline
Ppat22G0006650.1 Flavonoid IFR low borderline
Ppat22G0006650.2 Flavonoid IFR low borderline
Ppat23G0007110.1 Flavonoid IFR low borderline
Ppat23G0007110.2 Flavonoid IFR low borderline
Ppat24G0008270.1 Flavonoid IFR low borderline
Ppat24G0008270.2 Flavonoid IFR low borderline
Ppat24G0009230.1 Flavonoid IFR low borderline
Ppat24G0009230.2 Flavonoid IFR low borderline
Ppat24G0009230.3 Flavonoid IFR low borderline
Ppat24G0009230.4 Flavonoid IFR low borderline
Ppat24G0009230.5 Flavonoid IFR low borderline
Ppat25G0001550.1 Flavonoid IFR low borderline
Ppat25G0001550.2 Flavonoid IFR low borderline
Ppat25G0004270.1 Flavonoid IFR low borderline
Ppat25G0004270.2 Flavonoid IFR low borderline
Ppat26G0004330.1 Flavonoid IFR low borderline
Ppat26G0004330.2 Flavonoid IFR low borderline
Ppat27G0003890.1 Flavonoid IFR medium pass
Ppat27G0003890.2 Flavonoid IFR medium pass
Ppat01G0005570.1 Flavonoid IFS low borderline
Ppat01G0005570.2 Flavonoid IFS low borderline
Ppat01G0005570.3 Flavonoid IFS low borderline
Ppat02G0009180.1 Flavonoid IFS low borderline
Ppat02G0009180.2 Flavonoid IFS low borderline
Ppat02G0013530.1 Flavonoid IFS low borderline
Ppat02G0013530.2 Flavonoid IFS low borderline
Ppat02G0013530.3 Flavonoid IFS low borderline
Ppat02G0015110.1 Flavonoid IFS low borderline
Ppat02G0015110.2 Flavonoid IFS low borderline
Ppat02G0018290.1 Flavonoid IFS medium borderline
Ppat02G0018290.2 Flavonoid IFS medium borderline
Ppat03G0012250.1 Flavonoid IFS medium borderline
Ppat03G0012250.2 Flavonoid IFS medium borderline
Ppat03G0017040.1 Flavonoid IFS low borderline
Ppat03G0017040.2 Flavonoid IFS low borderline
Ppat03G0017040.3 Flavonoid IFS low borderline