Physcomitrella patens (physcomitrella_patens)
Imported from atlas release summary for Physcomitrella patens.
2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4577
Family-Level Calls
BAHD
8.13%
4CL
7.14%
POD
6.25%
NMT
5.81%
C4H
4.52%
C3'H/CYP98A
4.37%
STR
3.58%
CYP76
2.95%
Other Families
57.24%
More Families (95)
F3H
133
2.91%
CODM/T6ODM
124
2.71%
IFR
102
2.23%
IFS
101
2.21%
GS
96
2.1%
BR6OX2/CYP85A2
92
2.01%
T3O
88
1.92%
CYP71
77
1.68%
F3'H/CYP75B
76
1.66%
DWF4/CYP90B1
70
1.53%
PAL
63
1.38%
SMT1/SMT2/SMT3
63
1.38%
UFGT
62
1.35%
PYKS
61
1.33%
CSE
60
1.31%
UGT
58
1.27%
CAD
57
1.25%
TRI/TRII
53
1.16%
7DLGT
50
1.09%
RAS
49
1.07%
SGD
43
0.94%
PMT
42
0.92%
CNMT
41
0.9%
CAS
41
0.9%
HCT
39
0.85%
IO
34
0.74%
T16H
33
0.72%
CHS
33
0.72%
FNS
31
0.68%
MVK
31
0.68%
SQS/FDFT1
30
0.66%
SLS
29
0.63%
H6H
29
0.63%
MPO
29
0.63%
COR
28
0.61%
CPD/CYP90A1
26
0.57%
LAC
24
0.52%
8HGO
22
0.48%
G8O/G8H
21
0.46%
F3'5'H/CYP75A
20
0.44%
ANR
19
0.42%
COMT
19
0.42%
DFR
18
0.39%
CCR
18
0.39%
CPR
18
0.39%
TPS
17
0.37%
DWF5
16
0.35%
GGPPS
15
0.33%
AACT
15
0.33%
CHI
13
0.28%
MVD
13
0.28%
DXS
12
0.26%
MCT/IspD
12
0.26%
NCS
11
0.24%
GES
11
0.24%
TAT
11
0.24%
CYP90D1
10
0.22%
7DLH
9
0.2%
XMT_MXMT_DXMT
9
0.2%
FLS
9
0.2%
CYP51G1
9
0.2%
DXR
9
0.2%
TDC
8
0.17%
ROT3/CYP90C1
8
0.17%
DET2
8
0.17%
FPPS
8
0.17%
MDS/IspF
8
0.17%
TYDC_DDC
7
0.15%
16OMT
7
0.15%
ANS/LDOX
7
0.15%
CCoAOMT
7
0.15%
DWF1
7
0.15%
SMO1/SMO2
7
0.15%
HDS/IspG
7
0.15%
CMK/IspE
7
0.15%
HMGR
6
0.13%
HMGS
6
0.13%
HDR/IspH
6
0.13%
ADC
5
0.11%
CYP80B1
5
0.11%
BBE
4
0.09%
LAMT
4
0.09%
HPPR
4
0.09%
SQE
4
0.09%
CPI1
4
0.09%
HYD1
3
0.07%
FK
3
0.07%
PMK
3
0.07%
CYP719
2
0.04%
ISY
2
0.04%
F5H/CYP84A
2
0.04%
BR6OX1/CYP85A1
2
0.04%
DWF7
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 556 | 19 | BAHD (308) | View species results |
| Phenylpropanoid pathway | 489 | 12 | POD (277) | View species results |
| Alkaloid pathway | 391 | 17 | NMT (72) | View species results |
| Flavonoid pathway | 162 | 9 | UFGT (46) | View species results |
| Rosmarinic acid pathway | 152 | 7 | C4H (49) | View species results |
| Steroid pathway | 135 | 13 | CAS (37) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1256 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 460 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Ppat03G0006490.4 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0007910.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ppat03G0007910.2 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ppat03G0007910.3 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Ppat03G0007970.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0007970.2 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0007970.3 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Ppat03G0011040.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.4 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.5 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.6 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.7 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat03G0011040.8 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat04G0000850.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat04G0000850.2 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat04G0000850.3 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ppat04G0000850.4 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Ppat04G0000850.5 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat04G0004420.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004420.2 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004420.3 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004420.4 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Ppat04G0004950.1 | Alkaloid | NMT | medium | pass | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Ppat04G0011690.1 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Ppat04G0011690.2 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Ppat04G0011690.3 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Ppat04G0014010.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.10 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.11 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.12 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.13 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.3 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.4 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.5 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.6 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.7 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.8 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat04G0014010.9 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Ppat05G0007500.1 | Alkaloid | NMT | medium | borderline | NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI |
| Ppat06G0001710.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Ppat06G0001710.2 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Ppat06G0001710.3 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Ppat06G0001710.4 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Ppat06G0003660.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Ppat06G0010560.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat06G0010560.3 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Ppat07G0003390.1 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |