PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Ppat16G0010960.1 Flavonoid IFS medium borderline
Ppat16G0010960.2 Flavonoid IFS medium borderline
Ppat17G0006270.1 Flavonoid IFS medium borderline
Ppat17G0006270.2 Flavonoid IFS medium borderline
Ppat17G0006270.3 Flavonoid IFS medium borderline
Ppat17G0010910.1 Flavonoid IFS low borderline
Ppat17G0010910.2 Flavonoid IFS low borderline
Ppat18G0000180.1 Flavonoid IFS low borderline
Ppat21G0004470.1 Flavonoid IFS medium borderline
Ppat21G0004470.2 Flavonoid IFS medium borderline
Ppat21G0005170.1 Flavonoid IFS low borderline
Ppat21G0005170.2 Flavonoid IFS low borderline
Ppat22G0008430.5 Flavonoid IFS medium borderline
Ppat23G0001610.1 Flavonoid IFS low borderline
Ppat23G0001610.2 Flavonoid IFS low borderline
Ppat23G0002240.1 Flavonoid IFS medium borderline
Ppat23G0002240.2 Flavonoid IFS medium borderline
Ppat23G0002270.1 Flavonoid IFS medium borderline
Ppat23G0002270.2 Flavonoid IFS medium borderline
Ppat23G0002270.3 Flavonoid IFS medium borderline
Ppat23G0002270.4 Flavonoid IFS medium borderline
Ppat23G0002270.5 Flavonoid IFS medium borderline
Ppat23G0002270.6 Flavonoid IFS medium borderline
Ppat24G0007130.1 Flavonoid IFS low borderline
Ppat24G0007130.2 Flavonoid IFS low borderline
Ppat24G0007130.3 Flavonoid IFS low borderline
Ppat24G0008440.1 Flavonoid IFS low borderline
Ppat24G0008440.2 Flavonoid IFS low borderline
Ppat24G0008440.3 Flavonoid IFS low borderline
Ppat25G0006540.2 Flavonoid IFS low borderline
Ppat27G0002190.1 Flavonoid IFS medium borderline
Ppat27G0002190.2 Flavonoid IFS medium borderline
Ppat27G0002210.1 Flavonoid IFS medium borderline
Ppat27G0002210.2 Flavonoid IFS medium borderline
Ppat01G0008460.1 Flavonoid PAL low borderline
Ppat01G0008460.2 Flavonoid PAL low borderline
Ppat01G0008490.1 Flavonoid PAL high pass
Ppat01G0008490.2 Flavonoid PAL high pass
Ppat01G0008580.1 Flavonoid PAL high pass
Ppat01G0008580.2 Flavonoid PAL high pass
Ppat07G0010510.1 Flavonoid PAL medium pass
Ppat13G0005010.1 Flavonoid PAL high pass
Ppat14G0006000.1 Flavonoid PAL high pass
Ppat14G0006000.2 Flavonoid PAL high pass
Ppat18G0002010.1 Flavonoid PAL high pass
Ppat21G0003320.1 Flavonoid PAL high pass
Ppat21G0003320.2 Flavonoid PAL high pass
Ppat22G0007730.1 Flavonoid PAL high pass
Ppat22G0007820.1 Flavonoid PAL medium pass
Ppat22G0007820.2 Flavonoid PAL medium pass