PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Ppat02G0016460.1 Alkaloid PYKS high pass
Ppat02G0016460.2 Alkaloid PYKS high pass
Ppat02G0017780.1 Alkaloid PYKS high pass
Ppat02G0017780.2 Alkaloid PYKS high pass
Ppat02G0017820.1 Alkaloid PYKS high pass
Ppat02G0017820.2 Alkaloid PYKS high pass
Ppat02G0017830.1 Alkaloid PYKS high pass
Ppat02G0017830.2 Alkaloid PYKS high pass
Ppat02G0017850.1 Alkaloid PYKS high pass
Ppat02G0017850.2 Alkaloid PYKS high pass
Ppat02G0017880.1 Alkaloid PYKS medium pass
Ppat02G0017930.1 Alkaloid PYKS high pass
Ppat03G0007740.1 Alkaloid PYKS medium pass
Ppat03G0007740.2 Alkaloid PYKS medium pass
Ppat03G0014670.1 Alkaloid PYKS low borderline
Ppat03G0014670.2 Alkaloid PYKS low borderline
Ppat04G0001370.1 Alkaloid PYKS low borderline
Ppat07G0005580.1 Alkaloid PYKS low borderline
Ppat07G0005580.2 Alkaloid PYKS low borderline
Ppat08G0000730.1 Alkaloid PYKS low borderline
Ppat08G0000730.2 Alkaloid PYKS low borderline
Ppat09G0008740.1 Alkaloid PYKS low borderline
Ppat09G0010490.1 Alkaloid PYKS low borderline
Ppat09G0010490.2 Alkaloid PYKS low borderline
Ppat11G0004270.1 Alkaloid PYKS high pass
Ppat11G0004270.2 Alkaloid PYKS high pass
Ppat11G0006890.1 Alkaloid PYKS low borderline
Ppat11G0006890.2 Alkaloid PYKS low borderline
Ppat11G0006890.3 Alkaloid PYKS low borderline
Ppat12G0010590.1 Alkaloid PYKS low borderline
Ppat12G0010590.2 Alkaloid PYKS low borderline
Ppat13G0001510.1 Alkaloid PYKS low borderline
Ppat13G0001510.2 Alkaloid PYKS low borderline
Ppat13G0001510.3 Alkaloid PYKS low borderline
Ppat13G0001510.4 Alkaloid PYKS low borderline
Ppat13G0001510.5 Alkaloid PYKS low borderline
Ppat14G0010070.1 Alkaloid PYKS high pass
Ppat14G0010070.2 Alkaloid PYKS high pass
Ppat14G0010070.3 Alkaloid PYKS high pass
Ppat14G0010070.4 Alkaloid PYKS high pass
Ppat14G0010070.5 Alkaloid PYKS high pass
Ppat14G0010070.6 Alkaloid PYKS high pass
Ppat15G0010590.4 Alkaloid PYKS low borderline
Ppat15G0010590.5 Alkaloid PYKS low borderline
Ppat18G0001990.1 Alkaloid PYKS high pass
Ppat18G0001990.2 Alkaloid PYKS high pass
Ppat19G0006430.1 Alkaloid PYKS medium pass
Ppat19G0006430.2 Alkaloid PYKS medium pass
Ppat19G0006450.1 Alkaloid PYKS low borderline
Ppat19G0006470.2 Alkaloid PYKS medium pass