PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Ppat27G0002190.2 Phenylpropanoid C3'H/CYP98A medium borderline
Ppat27G0002210.1 Phenylpropanoid C3'H/CYP98A medium borderline
Ppat27G0002210.2 Phenylpropanoid C3'H/CYP98A medium borderline
Ppat27G0002680.1 Phenylpropanoid C3'H/CYP98A medium pass
Ppat27G0002680.2 Phenylpropanoid C3'H/CYP98A medium pass
Ppat27G0002730.1 Phenylpropanoid C3'H/CYP98A medium borderline
Ppat27G0002730.2 Phenylpropanoid C3'H/CYP98A medium borderline
Ppat27G0004040.1 Phenylpropanoid C3'H/CYP98A low borderline
Ppat27G0004040.2 Phenylpropanoid C3'H/CYP98A low borderline
Ppat12G0002570.1 Phenylpropanoid C4H/CYP73A medium pass
Ppat15G0009650.1 Phenylpropanoid C4H/CYP73A medium borderline
Ppat15G0009650.2 Phenylpropanoid C4H/CYP73A medium borderline
Ppat16G0002890.1 Phenylpropanoid C4H/CYP73A medium borderline
Ppat16G0011970.1 Phenylpropanoid C4H/CYP73A medium pass
Ppat25G0002710.1 Phenylpropanoid C4H/CYP73A low borderline
Ppat25G0002710.2 Phenylpropanoid C4H/CYP73A low borderline
Ppat25G0004470.1 Phenylpropanoid C4H/CYP73A medium borderline
Ppat25G0004470.2 Phenylpropanoid C4H/CYP73A medium borderline
Ppat25G0006540.2 Phenylpropanoid C4H/CYP73A low borderline
Ppat01G0001930.1 Phenylpropanoid CAD low borderline
Ppat01G0001930.2 Phenylpropanoid CAD low borderline
Ppat01G0001930.3 Phenylpropanoid CAD low borderline
Ppat01G0001930.5 Phenylpropanoid CAD low borderline
Ppat01G0019010.1 Phenylpropanoid CAD medium pass
Ppat01G0019010.2 Phenylpropanoid CAD medium pass
Ppat02G0005410.1 Phenylpropanoid CAD medium pass
Ppat02G0005410.2 Phenylpropanoid CAD medium pass
Ppat02G0005410.3 Phenylpropanoid CAD medium pass
Ppat02G0018280.1 Phenylpropanoid CAD low borderline
Ppat02G0018280.2 Phenylpropanoid CAD low borderline
Ppat02G0018280.3 Phenylpropanoid CAD low borderline
Ppat02G0018310.1 Phenylpropanoid CAD low borderline
Ppat02G0018310.2 Phenylpropanoid CAD low borderline
Ppat02G0018310.3 Phenylpropanoid CAD low borderline
Ppat03G0012880.1 Phenylpropanoid CAD low borderline
Ppat07G0006520.1 Phenylpropanoid CAD medium borderline
Ppat07G0006520.2 Phenylpropanoid CAD medium borderline
Ppat07G0011610.1 Phenylpropanoid CAD low borderline
Ppat07G0011610.2 Phenylpropanoid CAD low borderline
Ppat09G0000670.1 Phenylpropanoid CAD low borderline
Ppat09G0000670.2 Phenylpropanoid CAD low borderline
Ppat09G0000670.3 Phenylpropanoid CAD low borderline
Ppat10G0000220.1 Phenylpropanoid CAD low borderline
Ppat10G0000220.10 Phenylpropanoid CAD medium pass
Ppat10G0000220.2 Phenylpropanoid CAD medium pass
Ppat10G0000220.3 Phenylpropanoid CAD medium pass
Ppat10G0000220.4 Phenylpropanoid CAD low borderline
Ppat10G0000220.5 Phenylpropanoid CAD medium pass
Ppat10G0000220.6 Phenylpropanoid CAD low borderline
Ppat10G0000220.7 Phenylpropanoid CAD medium pass