PlantSME Plant secondary metabolism enzyme database

Pistacia chinensis (pistacia_chinensis)

Imported from atlas release summary for Pistacia chinensis.

2075
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.78% Alkaloid pathway 24.77% Phenylpropanoid pathway 18.6% Flavonoid pathway 11.66% Rosmarinic acid pathway 7.86% Steroid pathway 7.33%
Family Distribution
C4H 5.77% BAHD 5.54% C3'H/CYP98A 5.43% UGT 5.16% IFS 3.53% CYP76 3.51% 7DLGT 3.18% POD 3.03%
Other Families 64.86%
More Families (98)
4CL 141 2.95% CAD 133 2.78% UFGT 129 2.69% DWF4/CYP90B1 119 2.49% T3O 118 2.47% NMT 98 2.05% F3H 98 2.05% CAS 92 1.92% STR 84 1.75% BR6OX2/CYP85A2 79 1.65% F3'H/CYP75B 78 1.63% TPS 78 1.63% TRI/TRII 76 1.59% CODM/T6ODM 73 1.52% GES 72 1.5% SMT1/SMT2/SMT3 71 1.48% G8O/G8H 63 1.32% PYKS 62 1.3% H6H 58 1.21% GS 55 1.15% COMT 54 1.13% IFR 53 1.11% SGD 50 1.04% LAC 50 1.04% ANR 49 1.02% F3'5'H/CYP75A 45 0.94% T16H 44 0.92% CHS 42 0.88% HCT 42 0.88% FNS 41 0.86% RAS 40 0.84% 7DLH 38 0.79% 16OMT 35 0.73% CSE 35 0.73% TAT 35 0.73% CYP90D1 33 0.69% SLS 31 0.65% COR 31 0.65% PMT 30 0.63% PAL 30 0.63% CYP71 30 0.63% LAMT 28 0.58% BBE 26 0.54% CCR 26 0.54% HPPR 26 0.54% CPD/CYP90A1 26 0.54% IO 25 0.52% NCS 23 0.48% 8HGO 20 0.42% ANS/LDOX 20 0.42% CYP719 18 0.38% DFR 18 0.38% F5H/CYP84A 17 0.36% BR6OX1/CYP85A1 16 0.33% ROT3/CYP90C1 11 0.23% SQE 11 0.23% GGPPS 11 0.23% TYDC_DDC 10 0.21% FPPS 10 0.21% CNMT 9 0.19% ISY 9 0.19% CYP80B1 7 0.15% MPO 7 0.15% 6OMT_4OMT_SOMT 6 0.13% CHI 6 0.13% CCoAOMT 6 0.13% CPR 6 0.13% SQS/FDFT1 6 0.13% DXS 6 0.13% HMGS 6 0.13% XMT_MXMT_DXMT 5 0.1% AACT 5 0.1% SMO1/SMO2 4 0.08% DET2 4 0.08% HMGR 4 0.08% MVK 4 0.08% PMK 4 0.08% CYP80F1 3 0.06% FLS 3 0.06% CYP51G1 3 0.06% FK 3 0.06% CPI1 3 0.06% MVD 3 0.06% MCT/IspD 3 0.06% GPPS 3 0.06% DXR 3 0.06% ODC 2 0.04% TDC 2 0.04% DWF5 2 0.04% DWF1 2 0.04% MDS/IspF 2 0.04% ADC 1 0.02% DWF7 1 0.02% HYD1 1 0.02% HDR/IspH 1 0.02% IDI 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 618 19 BAHD (216) View species results
Alkaloid pathway 514 25 7DLGT (65) View species results
Phenylpropanoid pathway 386 11 POD (132) View species results
Flavonoid pathway 242 12 UFGT (107) View species results
Rosmarinic acid pathway 163 7 C4H (39) View species results
Steroid pathway 152 13 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1677 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 347 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Gene Pathway Family Confidence Status Best Target
pistacia_chinensis_KAJ0020426.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
pistacia_chinensis_KAJ0026273.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
pistacia_chinensis_KAJ0026274.1 Alkaloid ISY high pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
pistacia_chinensis_KAJ0034946.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
pistacia_chinensis_KAJ0034947.1 Alkaloid ISY low borderline ISY__00003__sp_A0A221J5P3_ISY_ANTMA
pistacia_chinensis_KAJ0034948.1 Alkaloid ISY low borderline ISY__00001__sp_A0A1C9CX56_CYC1_CAMAC
pistacia_chinensis_KAJ0034950.1 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
pistacia_chinensis_KAJ0035336.1 Alkaloid ISY medium pass ISY__00001__sp_A0A1C9CX56_CYC1_CAMAC
pistacia_chinensis_KAJ0035782.1 Alkaloid ISY medium pass ISY__00001__sp_A0A1C9CX56_CYC1_CAMAC