PlantSME Plant secondary metabolism enzyme database

Pisum sativum (pisum_sativum)

Imported from atlas release summary for Pisum sativum.

2142
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Alkaloid pathway 26.8% Terpenoid pathway 26.7% Phenylpropanoid pathway 18.91% Flavonoid pathway 12.89% Rosmarinic acid pathway 7.47% Steroid pathway 7.24%
Family Distribution
C3'H/CYP98A 5.42% BAHD 5.42% C4H 5.22% 4CL 4.67% IFS 3.84% UGT 3.69% 7DLGT 3.46% UFGT 3.44%
Other Families 64.86%
More Families (97)
POD 169 3.25% CYP76 168 3.23% NMT 166 3.19% F3H 162 3.11% T3O 149 2.86% DWF4/CYP90B1 121 2.32% CAD 118 2.27% SGD 112 2.15% STR 99 1.9% CODM/T6ODM 92 1.77% CAS 91 1.75% H6H 84 1.61% BR6OX2/CYP85A2 84 1.61% F3'H/CYP75B 81 1.56% SMT1/SMT2/SMT3 73 1.4% TRI/TRII 71 1.36% IFR 70 1.34% TPS 63 1.21% GES 60 1.15% GS 55 1.06% CYP71 52 1.0% T16H 51 0.98% MPO 46 0.88% PAL 45 0.86% CYP90D1 44 0.85% LAC 41 0.79% PMT 40 0.77% 7DLH 39 0.75% HCT 39 0.75% CSE 37 0.71% RAS 36 0.69% ANR 35 0.67% COMT 35 0.67% BBE 33 0.63% 8HGO 30 0.58% F3'5'H/CYP75A 29 0.56% AACT 29 0.56% PYKS 28 0.54% IO 26 0.5% ROT3/CYP90C1 26 0.5% COR 25 0.48% G8O/G8H 25 0.48% SLS 24 0.46% FNS 23 0.44% NCS 22 0.42% CCR 22 0.42% LAMT 21 0.4% TAT 21 0.4% BR6OX1/CYP85A1 19 0.36% CPD/CYP90A1 19 0.36% CCoAOMT 18 0.35% CPR 17 0.33% CYP51G1 17 0.33% ANS/LDOX 16 0.31% F5H/CYP84A 16 0.31% CNMT 15 0.29% SQE 15 0.29% SQS/FDFT1 15 0.29% DXS 14 0.27% 16OMT 13 0.25% DFR 13 0.25% CYP719 10 0.19% HPPR 9 0.17% MVD 9 0.17% DET2 8 0.15% GGPPS 8 0.15% CYP80B1 7 0.13% DWF7 7 0.13% CHI 6 0.12% DWF1 6 0.12% SMO1/SMO2 6 0.12% FPPS 6 0.12% MVK 6 0.12% TYDC_DDC 5 0.1% XMT_MXMT_DXMT 5 0.1% PMK 5 0.1% HMGR 5 0.1% DXR 5 0.1% TDC 4 0.08% DWF5 4 0.08% ISY 3 0.06% ADC 3 0.06% FLS 3 0.06% HYD1 3 0.06% CMK/IspE 3 0.06% IDI 3 0.06% MCT/IspD 3 0.06% 6OMT_4OMT_SOMT 2 0.04% CYP80F1 2 0.04% FK 2 0.04% HMGS 2 0.04% MDS/IspF 2 0.04% HDR/IspH 2 0.04% ODC 1 0.02% CHS 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Alkaloid pathway 574 22 SGD (98) View species results
Terpenoid pathway 572 19 BAHD (227) View species results
Phenylpropanoid pathway 405 11 POD (154) View species results
Flavonoid pathway 276 9 UFGT (171) View species results
Rosmarinic acid pathway 160 7 4CL (50) View species results
Steroid pathway 155 14 CAS (75) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1763 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 357 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
Psat05G0024580.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO
Psatscaffold029560034680.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG