Platycarya strobilacea (platycarya_strobilacea)
Imported from atlas release summary for Platycarya strobilacea.
1718
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1718
Candidate Genes
C3'H/CYP98A
6.23%
C4H
6.19%
BAHD
5.2%
IFS
4.42%
CYP76
4.3%
UGT
4.14%
POD
3.72%
T3O
3.65%
Other Families
62.16%
More Families (95)
7DLGT
153
3.6%
UFGT
148
3.48%
4CL
147
3.46%
F3H
121
2.85%
CAD
89
2.09%
BR6OX2/CYP85A2
89
2.09%
DWF4/CYP90B1
88
2.07%
CODM/T6ODM
76
1.79%
NMT
74
1.74%
STR
67
1.58%
CYP90D1
66
1.55%
F3'H/CYP75B
64
1.51%
CYP71
63
1.48%
CAS
61
1.43%
H6H
56
1.32%
SMT1/SMT2/SMT3
55
1.29%
LAC
52
1.22%
TPS
48
1.13%
GES
46
1.08%
GS
45
1.06%
HCT
45
1.06%
TRI/TRII
44
1.03%
IFR
42
0.99%
PYKS
39
0.92%
T16H
37
0.87%
IO
34
0.8%
TAT
34
0.8%
CSE
33
0.78%
FNS
30
0.71%
G8O/G8H
29
0.68%
SGD
28
0.66%
COMT
28
0.66%
RAS
28
0.66%
F5H/CYP84A
27
0.63%
PMT
26
0.61%
LAMT
25
0.59%
ANR
25
0.59%
PAL
24
0.56%
F3'5'H/CYP75A
24
0.56%
16OMT
22
0.52%
SLS
22
0.52%
7DLH
21
0.49%
NCS
20
0.47%
8HGO
20
0.47%
BBE
20
0.47%
CPD/CYP90A1
20
0.47%
CCR
18
0.42%
BR6OX1/CYP85A1
18
0.42%
COR
15
0.35%
CNMT
13
0.31%
CHS
12
0.28%
ISY
11
0.26%
CCoAOMT
11
0.26%
SQE
11
0.26%
ROT3/CYP90C1
10
0.24%
ANS/LDOX
9
0.21%
GGPPS
9
0.21%
CYP719
8
0.19%
MPO
8
0.19%
DFR
8
0.19%
SQS/FDFT1
8
0.19%
CPR
7
0.16%
CYP51G1
7
0.16%
AACT
7
0.16%
CYP80B1
6
0.14%
HPPR
6
0.14%
DET2
6
0.14%
DXS
6
0.14%
FPPS
6
0.14%
TYDC_DDC
5
0.12%
MVD
5
0.12%
XMT_MXMT_DXMT
4
0.09%
CYP80F1
4
0.09%
CHI
4
0.09%
MVK
4
0.09%
HMGR
4
0.09%
HYD1
3
0.07%
SMO1/SMO2
3
0.07%
PMK
3
0.07%
HDS/IspG
3
0.07%
TDC
2
0.05%
ODC
2
0.05%
ADC
2
0.05%
CPI1
2
0.05%
DWF7
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
IDI
2
0.05%
HMGS
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
DWF5
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 500 | 19 | BAHD (173) | View species results |
| Phenylpropanoid pathway | 369 | 12 | POD (144) | View species results |
| Alkaloid pathway | 366 | 23 | 7DLGT (74) | View species results |
| Flavonoid pathway | 228 | 9 | UFGT (144) | View species results |
| Rosmarinic acid pathway | 146 | 7 | C4H (56) | View species results |
| Steroid pathway | 109 | 12 | CAS (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1691 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 294 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| platycarya_strobilacea_PstrChr02G001031.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr02G001044.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr05G002077.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr06G000479.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr07G000445.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr07G000447.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr07G000448.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr07G000449.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr07G000451.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr07G001401.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr08G000334.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr08G000340.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr11G000122.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr12G000083.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001964.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001966.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001967.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001968.1 | Alkaloid | LAMT | medium | pass | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001969.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001970.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001971.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrChr14G001973.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrContig115G000001.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrContig115G000002.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |
| platycarya_strobilacea_PstrContig116G000015.1 | Alkaloid | LAMT | medium | borderline | LAMT__00001__sp_B2KPR3_LAMT_CATRO |