PlantSME Plant secondary metabolism enzyme database

Platycarya strobilacea (platycarya_strobilacea)

Imported from atlas release summary for Platycarya strobilacea.

1959
Candidate Protein Records
1718
Pathway-Level Records
4252
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.1% Phenylpropanoid pathway 21.48% Alkaloid pathway 21.3% Flavonoid pathway 13.27% Rosmarinic acid pathway 8.5% Steroid pathway 6.34%
Family Distribution
C3'H/CYP98A 6.23% C4H 6.19% BAHD 5.2% IFS 4.42% CYP76 4.3% UGT 4.14% POD 3.72% T3O 3.65%
Other Families 62.16%
More Families (95)
7DLGT 153 3.6% UFGT 148 3.48% 4CL 147 3.46% F3H 121 2.85% CAD 89 2.09% BR6OX2/CYP85A2 89 2.09% DWF4/CYP90B1 88 2.07% CODM/T6ODM 76 1.79% NMT 74 1.74% STR 67 1.58% CYP90D1 66 1.55% F3'H/CYP75B 64 1.51% CYP71 63 1.48% CAS 61 1.43% H6H 56 1.32% SMT1/SMT2/SMT3 55 1.29% LAC 52 1.22% TPS 48 1.13% GES 46 1.08% GS 45 1.06% HCT 45 1.06% TRI/TRII 44 1.03% IFR 42 0.99% PYKS 39 0.92% T16H 37 0.87% IO 34 0.8% TAT 34 0.8% CSE 33 0.78% FNS 30 0.71% G8O/G8H 29 0.68% SGD 28 0.66% COMT 28 0.66% RAS 28 0.66% F5H/CYP84A 27 0.63% PMT 26 0.61% LAMT 25 0.59% ANR 25 0.59% PAL 24 0.56% F3'5'H/CYP75A 24 0.56% 16OMT 22 0.52% SLS 22 0.52% 7DLH 21 0.49% NCS 20 0.47% 8HGO 20 0.47% BBE 20 0.47% CPD/CYP90A1 20 0.47% CCR 18 0.42% BR6OX1/CYP85A1 18 0.42% COR 15 0.35% CNMT 13 0.31% CHS 12 0.28% ISY 11 0.26% CCoAOMT 11 0.26% SQE 11 0.26% ROT3/CYP90C1 10 0.24% ANS/LDOX 9 0.21% GGPPS 9 0.21% CYP719 8 0.19% MPO 8 0.19% DFR 8 0.19% SQS/FDFT1 8 0.19% CPR 7 0.16% CYP51G1 7 0.16% AACT 7 0.16% CYP80B1 6 0.14% HPPR 6 0.14% DET2 6 0.14% DXS 6 0.14% FPPS 6 0.14% TYDC_DDC 5 0.12% MVD 5 0.12% XMT_MXMT_DXMT 4 0.09% CYP80F1 4 0.09% CHI 4 0.09% MVK 4 0.09% HMGR 4 0.09% HYD1 3 0.07% SMO1/SMO2 3 0.07% PMK 3 0.07% HDS/IspG 3 0.07% TDC 2 0.05% ODC 2 0.05% ADC 2 0.05% CPI1 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% MCT/IspD 2 0.05% IDI 2 0.05% HMGS 2 0.05% MDS/IspF 2 0.05% DXR 2 0.05% DWF5 1 0.02% DWF1 1 0.02% FK 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 500 19 BAHD (173) View species results
Phenylpropanoid pathway 369 12 POD (144) View species results
Alkaloid pathway 366 23 7DLGT (74) View species results
Flavonoid pathway 228 9 UFGT (144) View species results
Rosmarinic acid pathway 146 7 C4H (56) View species results
Steroid pathway 109 12 CAS (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1691 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 294 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Protein/Isoform Record Pathway Family Confidence Status
platycarya_strobilacea_PstrChr15G000617.1 Alkaloid T3O medium borderline
platycarya_strobilacea_PstrChr15G001021.1 Alkaloid T3O medium borderline
platycarya_strobilacea_PstrChr15G001022.1 Alkaloid T3O low borderline
platycarya_strobilacea_PstrChr15G001241.1 Alkaloid T3O medium pass
platycarya_strobilacea_PstrChr15G001254.1 Alkaloid T3O medium pass