Platycarya strobilacea (platycarya_strobilacea)
Imported from atlas release summary for Platycarya strobilacea.
1959
Candidate Protein Records
1718
Pathway-Level Records
4252
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4252
Family-Level Calls
C3'H/CYP98A
6.23%
C4H
6.19%
BAHD
5.2%
IFS
4.42%
CYP76
4.3%
UGT
4.14%
POD
3.72%
T3O
3.65%
Other Families
62.16%
More Families (95)
7DLGT
153
3.6%
UFGT
148
3.48%
4CL
147
3.46%
F3H
121
2.85%
CAD
89
2.09%
BR6OX2/CYP85A2
89
2.09%
DWF4/CYP90B1
88
2.07%
CODM/T6ODM
76
1.79%
NMT
74
1.74%
STR
67
1.58%
CYP90D1
66
1.55%
F3'H/CYP75B
64
1.51%
CYP71
63
1.48%
CAS
61
1.43%
H6H
56
1.32%
SMT1/SMT2/SMT3
55
1.29%
LAC
52
1.22%
TPS
48
1.13%
GES
46
1.08%
GS
45
1.06%
HCT
45
1.06%
TRI/TRII
44
1.03%
IFR
42
0.99%
PYKS
39
0.92%
T16H
37
0.87%
IO
34
0.8%
TAT
34
0.8%
CSE
33
0.78%
FNS
30
0.71%
G8O/G8H
29
0.68%
SGD
28
0.66%
COMT
28
0.66%
RAS
28
0.66%
F5H/CYP84A
27
0.63%
PMT
26
0.61%
LAMT
25
0.59%
ANR
25
0.59%
PAL
24
0.56%
F3'5'H/CYP75A
24
0.56%
16OMT
22
0.52%
SLS
22
0.52%
7DLH
21
0.49%
NCS
20
0.47%
8HGO
20
0.47%
BBE
20
0.47%
CPD/CYP90A1
20
0.47%
CCR
18
0.42%
BR6OX1/CYP85A1
18
0.42%
COR
15
0.35%
CNMT
13
0.31%
CHS
12
0.28%
ISY
11
0.26%
CCoAOMT
11
0.26%
SQE
11
0.26%
ROT3/CYP90C1
10
0.24%
ANS/LDOX
9
0.21%
GGPPS
9
0.21%
CYP719
8
0.19%
MPO
8
0.19%
DFR
8
0.19%
SQS/FDFT1
8
0.19%
CPR
7
0.16%
CYP51G1
7
0.16%
AACT
7
0.16%
CYP80B1
6
0.14%
HPPR
6
0.14%
DET2
6
0.14%
DXS
6
0.14%
FPPS
6
0.14%
TYDC_DDC
5
0.12%
MVD
5
0.12%
XMT_MXMT_DXMT
4
0.09%
CYP80F1
4
0.09%
CHI
4
0.09%
MVK
4
0.09%
HMGR
4
0.09%
HYD1
3
0.07%
SMO1/SMO2
3
0.07%
PMK
3
0.07%
HDS/IspG
3
0.07%
TDC
2
0.05%
ODC
2
0.05%
ADC
2
0.05%
CPI1
2
0.05%
DWF7
2
0.05%
HDR/IspH
2
0.05%
MCT/IspD
2
0.05%
IDI
2
0.05%
HMGS
2
0.05%
MDS/IspF
2
0.05%
DXR
2
0.05%
DWF5
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 500 | 19 | BAHD (173) | View species results |
| Phenylpropanoid pathway | 369 | 12 | POD (144) | View species results |
| Alkaloid pathway | 366 | 23 | 7DLGT (74) | View species results |
| Flavonoid pathway | 228 | 9 | UFGT (144) | View species results |
| Rosmarinic acid pathway | 146 | 7 | C4H (56) | View species results |
| Steroid pathway | 109 | 12 | CAS (52) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1691 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 294 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| platycarya_strobilacea_PstrChr05G001547.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr05G001548.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr05G001551.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr05G001553.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr05G001554.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr06G000774.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr06G000778.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr07G001232.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr07G001233.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr07G001236.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr07G001914.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr08G000913.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr09G000235.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr09G001878.1 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr10G001292.1 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr11G000373.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00003__sp_Q9LVY1_TAT_ARATH |
| platycarya_strobilacea_PstrChr11G001096.1 | Rosmarinic Acid | TAT | low | borderline | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr11G001758.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr15G001183.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr15G001185.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr15G001187.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr15G001188.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr15G001245.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |
| platycarya_strobilacea_PstrChr15G001246.1 | Rosmarinic Acid | TAT | medium | pass | TAT__00001__sp_A0A2K8FQU5_TAT_CATRO |