PlantSME Plant secondary metabolism enzyme database

Poncirus trifoliata (poncirus_trifoliata)

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Imported from atlas release summary for Poncirus trifoliata.

1711
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.35% Alkaloid pathway 23.44% Phenylpropanoid pathway 19.23% Flavonoid pathway 12.45% Rosmarinic acid pathway 11.16% Steroid pathway 5.38%
Family Distribution
C3'H/CYP98A 6.8% C4H 6.67% BAHD 5.3% CYP76 4.77% IFS 4.17% T3O 4.15% UGT 3.71% 7DLGT 3.36%
Other Families 61.08%
More Families (96)
UFGT 149 3.29% NMT 134 2.96% F3H 128 2.83% POD 127 2.8% 4CL 123 2.72% DWF4/CYP90B1 115 2.54% F3'H/CYP75B 108 2.38% BR6OX2/CYP85A2 105 2.32% CODM/T6ODM 102 2.25% COMT 79 1.74% STR 75 1.66% CYP71 67 1.48% CYP90D1 65 1.43% CAS 59 1.3% HCT 58 1.28% TRI/TRII 52 1.15% TAT 50 1.1% H6H 49 1.08% BBE 48 1.06% RAS 45 0.99% G8O/G8H 43 0.95% TPS 42 0.93% GES 41 0.91% SMT1/SMT2/SMT3 40 0.88% CAD 37 0.82% T16H 36 0.79% PYKS 34 0.75% IFR 34 0.75% IO 32 0.71% LAMT 30 0.66% 16OMT 30 0.66% LAC 30 0.66% PMT 28 0.62% GS 26 0.57% F3'5'H/CYP75A 26 0.57% ANS/LDOX 24 0.53% PAL 24 0.53% F5H/CYP84A 24 0.53% FNS 23 0.51% SGD 22 0.49% ISY 22 0.49% CPD/CYP90A1 22 0.49% COR 21 0.46% CSE 20 0.44% 7DLH 19 0.42% CCR 19 0.42% ANR 16 0.35% SLS 15 0.33% NCS 14 0.31% 8HGO 14 0.31% CHS 14 0.31% CYP51G1 12 0.26% GGPPS 12 0.26% AACT 10 0.22% CNMT 9 0.2% TYDC_DDC 9 0.2% CYP80B1 9 0.2% MPO 9 0.2% DFR 9 0.2% CCoAOMT 9 0.2% CYP719 8 0.18% CPR 7 0.15% BR6OX1/CYP85A1 7 0.15% FPPS 7 0.15% ODC 6 0.13% HPPR 6 0.13% SQE 6 0.13% SQS/FDFT1 5 0.11% MVK 5 0.11% XMT_MXMT_DXMT 4 0.09% ROT3/CYP90C1 4 0.09% HYD1 4 0.09% DXS 4 0.09% MVD 4 0.09% 6OMT_4OMT_SOMT 3 0.07% CHI 3 0.07% DET2 3 0.07% DXR 3 0.07% MCT/IspD 3 0.07% TDC 2 0.04% FLS 2 0.04% DWF7 2 0.04% SMO1/SMO2 2 0.04% FK 2 0.04% CMK/IspE 2 0.04% HMGS 2 0.04% HMGR 2 0.04% PMK 2 0.04% HDR/IspH 2 0.04% ADC 1 0.02% DWF1 1 0.02% DWF5 1 0.02% GPPS 1 0.02% MDS/IspF 1 0.02% IDI 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 485 19 BAHD (190) View species results
Alkaloid pathway 401 23 7DLGT (81) View species results
Phenylpropanoid pathway 329 11 POD (120) View species results
Flavonoid pathway 213 11 UFGT (139) View species results
Rosmarinic acid pathway 191 7 C4H (78) View species results
Steroid pathway 92 11 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1920 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 343 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
poncirus_trifoliata_Pt1g016990.1 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
poncirus_trifoliata_Pt3g030860.1 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
poncirus_trifoliata_Pt7g020650.1 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
poncirus_trifoliata_Pt8g008460.1 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
poncirus_trifoliata_Pt8g011770.1 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
poncirus_trifoliata_Pt8g011790.1 Terpenoid FPPS low borderline FPPS__00001__sp_B8XA40_ZFPS_SOLHA
poncirus_trifoliata_PtUn008890.1 Terpenoid FPPS low borderline FPPS__00005__sp_P34802_GGPP1_ARATH