Poncirus trifoliata (poncirus_trifoliata)
/
Imported from atlas release summary for Poncirus trifoliata.
1711
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1711
Candidate Genes
C3'H/CYP98A
6.8%
C4H
6.67%
BAHD
5.3%
CYP76
4.77%
IFS
4.17%
T3O
4.15%
UGT
3.71%
7DLGT
3.36%
Other Families
61.08%
More Families (96)
UFGT
149
3.29%
NMT
134
2.96%
F3H
128
2.83%
POD
127
2.8%
4CL
123
2.72%
DWF4/CYP90B1
115
2.54%
F3'H/CYP75B
108
2.38%
BR6OX2/CYP85A2
105
2.32%
CODM/T6ODM
102
2.25%
COMT
79
1.74%
STR
75
1.66%
CYP71
67
1.48%
CYP90D1
65
1.43%
CAS
59
1.3%
HCT
58
1.28%
TRI/TRII
52
1.15%
TAT
50
1.1%
H6H
49
1.08%
BBE
48
1.06%
RAS
45
0.99%
G8O/G8H
43
0.95%
TPS
42
0.93%
GES
41
0.91%
SMT1/SMT2/SMT3
40
0.88%
CAD
37
0.82%
T16H
36
0.79%
PYKS
34
0.75%
IFR
34
0.75%
IO
32
0.71%
LAMT
30
0.66%
16OMT
30
0.66%
LAC
30
0.66%
PMT
28
0.62%
GS
26
0.57%
F3'5'H/CYP75A
26
0.57%
ANS/LDOX
24
0.53%
PAL
24
0.53%
F5H/CYP84A
24
0.53%
FNS
23
0.51%
SGD
22
0.49%
ISY
22
0.49%
CPD/CYP90A1
22
0.49%
COR
21
0.46%
CSE
20
0.44%
7DLH
19
0.42%
CCR
19
0.42%
ANR
16
0.35%
SLS
15
0.33%
NCS
14
0.31%
8HGO
14
0.31%
CHS
14
0.31%
CYP51G1
12
0.26%
GGPPS
12
0.26%
AACT
10
0.22%
CNMT
9
0.2%
TYDC_DDC
9
0.2%
CYP80B1
9
0.2%
MPO
9
0.2%
DFR
9
0.2%
CCoAOMT
9
0.2%
CYP719
8
0.18%
CPR
7
0.15%
BR6OX1/CYP85A1
7
0.15%
FPPS
7
0.15%
ODC
6
0.13%
HPPR
6
0.13%
SQE
6
0.13%
SQS/FDFT1
5
0.11%
MVK
5
0.11%
XMT_MXMT_DXMT
4
0.09%
ROT3/CYP90C1
4
0.09%
HYD1
4
0.09%
DXS
4
0.09%
MVD
4
0.09%
6OMT_4OMT_SOMT
3
0.07%
CHI
3
0.07%
DET2
3
0.07%
DXR
3
0.07%
MCT/IspD
3
0.07%
TDC
2
0.04%
FLS
2
0.04%
DWF7
2
0.04%
SMO1/SMO2
2
0.04%
FK
2
0.04%
CMK/IspE
2
0.04%
HMGS
2
0.04%
HMGR
2
0.04%
PMK
2
0.04%
HDR/IspH
2
0.04%
ADC
1
0.02%
DWF1
1
0.02%
DWF5
1
0.02%
GPPS
1
0.02%
MDS/IspF
1
0.02%
IDI
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 485 | 19 | BAHD (190) | View species results |
| Alkaloid pathway | 401 | 23 | 7DLGT (81) | View species results |
| Phenylpropanoid pathway | 329 | 11 | POD (120) | View species results |
| Flavonoid pathway | 213 | 11 | UFGT (139) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (78) | View species results |
| Steroid pathway | 92 | 11 | CAS (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1920 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 343 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| poncirus_trifoliata_Pt7g008440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g008450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g008460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g008470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g008480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g010960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g014430.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g015300.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt7g020760.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| poncirus_trifoliata_Pt8g007800.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt8g008120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt8g011810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt9g000390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt9g012930.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| poncirus_trifoliata_Pt9g012940.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| poncirus_trifoliata_Pt9g012950.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| poncirus_trifoliata_Pt9g013670.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt9g013690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_Pt9g018890.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_PtUn003670.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| poncirus_trifoliata_PtUn010920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_PtUn010950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_PtUn010960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| poncirus_trifoliata_PtUn032250.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| poncirus_trifoliata_PtUn036220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |