PlantSME Plant secondary metabolism enzyme database

Populus ilicifolia (populus_ilicifolia)

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Imported from atlas release summary for Populus ilicifolia.

1825
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.25% Alkaloid pathway 22.58% Phenylpropanoid pathway 19.12% Flavonoid pathway 14.08% Rosmarinic acid pathway 8.66% Steroid pathway 5.32%
Family Distribution
C4H 6.04% C3'H/CYP98A 5.86% BAHD 5.7% UGT 4.87% 7DLGT 4.28% UFGT 4.13% IFS 3.99% 4CL 3.92%
Other Families 61.2%
More Families (96)
CYP76 172 3.88% T3O 163 3.68% POD 152 3.43% F3H 123 2.77% DWF4/CYP90B1 99 2.23% NMT 93 2.1% STR 77 1.74% F3'H/CYP75B 77 1.74% BR6OX2/CYP85A2 72 1.62% CODM/T6ODM 63 1.42% H6H 62 1.4% CAD 62 1.4% BBE 56 1.26% SMT1/SMT2/SMT3 55 1.24% TRI/TRII 54 1.22% LAC 54 1.22% CYP90D1 49 1.1% CYP71 46 1.04% HCT 45 1.01% IFR 44 0.99% IO 40 0.9% CSE 40 0.9% CAS 40 0.9% T16H 39 0.88% TAT 38 0.86% GES 37 0.83% PYKS 36 0.81% TPS 35 0.79% CPD/CYP90A1 34 0.77% COMT 32 0.72% RAS 32 0.72% GS 31 0.7% SGD 30 0.68% FNS 30 0.68% G8O/G8H 28 0.63% F5H/CYP84A 27 0.61% PMT 26 0.59% SLS 26 0.59% ANR 26 0.59% CCR 26 0.59% NCS 22 0.5% 16OMT 22 0.5% F3'5'H/CYP75A 22 0.5% 8HGO 21 0.47% BR6OX1/CYP85A1 19 0.43% LAMT 18 0.41% DFR 18 0.41% 7DLH 16 0.36% PAL 15 0.34% ROT3/CYP90C1 14 0.32% ISY 13 0.29% CHS 13 0.29% CYP51G1 13 0.29% CNMT 12 0.27% GGPPS 12 0.27% MPO 11 0.25% AACT 11 0.25% SQS/FDFT1 10 0.23% SQE 10 0.23% COR 9 0.2% DET2 9 0.2% ANS/LDOX 8 0.18% CPR 8 0.18% FPPS 8 0.18% HPPR 7 0.16% MVK 7 0.16% DXS 7 0.16% CYP719 6 0.14% CCoAOMT 6 0.14% HMGR 6 0.14% MVD 6 0.14% SMO1/SMO2 5 0.11% ODC 4 0.09% TYDC_DDC 4 0.09% DWF1 4 0.09% TDC 3 0.07% CHI 3 0.07% DWF5 3 0.07% MDS/IspF 3 0.07% HMGS 3 0.07% PMK 3 0.07% MCT/IspD 3 0.07% CMK/IspE 3 0.07% IDI 3 0.07% CYP80F1 2 0.05% CYP80B1 2 0.05% CPI1 2 0.05% HYD1 2 0.05% DWF7 2 0.05% HDR/IspH 2 0.05% HDS/IspG 2 0.05% DXR 2 0.05% ADC 1 0.02% 6OMT_4OMT_SOMT 1 0.02% XMT_MXMT_DXMT 1 0.02% FK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 552 20 UGT (199) View species results
Alkaloid pathway 412 23 7DLGT (92) View species results
Phenylpropanoid pathway 349 11 POD (139) View species results
Flavonoid pathway 257 9 UFGT (167) View species results
Rosmarinic acid pathway 158 7 C4H (56) View species results
Steroid pathway 97 12 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1671 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 330 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status Best Target
populus_ilicifolia_GWHPABKR023474 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR023509 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR023511 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR023514 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR023571 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR024727 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR026680 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR028903 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR029958 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR030492 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
populus_ilicifolia_GWHPABKR030493 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO
populus_ilicifolia_GWHPABKR031573 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO
populus_ilicifolia_GWHPABKR032264 Alkaloid CODM/T6ODM medium borderline CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO