Populus ilicifolia (populus_ilicifolia)
/
Imported from atlas release summary for Populus ilicifolia.
1825
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1825
Candidate Genes
C4H
6.04%
C3'H/CYP98A
5.86%
BAHD
5.7%
UGT
4.87%
7DLGT
4.28%
UFGT
4.13%
IFS
3.99%
4CL
3.92%
Other Families
61.2%
More Families (96)
CYP76
172
3.88%
T3O
163
3.68%
POD
152
3.43%
F3H
123
2.77%
DWF4/CYP90B1
99
2.23%
NMT
93
2.1%
STR
77
1.74%
F3'H/CYP75B
77
1.74%
BR6OX2/CYP85A2
72
1.62%
CODM/T6ODM
63
1.42%
H6H
62
1.4%
CAD
62
1.4%
BBE
56
1.26%
SMT1/SMT2/SMT3
55
1.24%
TRI/TRII
54
1.22%
LAC
54
1.22%
CYP90D1
49
1.1%
CYP71
46
1.04%
HCT
45
1.01%
IFR
44
0.99%
IO
40
0.9%
CSE
40
0.9%
CAS
40
0.9%
T16H
39
0.88%
TAT
38
0.86%
GES
37
0.83%
PYKS
36
0.81%
TPS
35
0.79%
CPD/CYP90A1
34
0.77%
COMT
32
0.72%
RAS
32
0.72%
GS
31
0.7%
SGD
30
0.68%
FNS
30
0.68%
G8O/G8H
28
0.63%
F5H/CYP84A
27
0.61%
PMT
26
0.59%
SLS
26
0.59%
ANR
26
0.59%
CCR
26
0.59%
NCS
22
0.5%
16OMT
22
0.5%
F3'5'H/CYP75A
22
0.5%
8HGO
21
0.47%
BR6OX1/CYP85A1
19
0.43%
LAMT
18
0.41%
DFR
18
0.41%
7DLH
16
0.36%
PAL
15
0.34%
ROT3/CYP90C1
14
0.32%
ISY
13
0.29%
CHS
13
0.29%
CYP51G1
13
0.29%
CNMT
12
0.27%
GGPPS
12
0.27%
MPO
11
0.25%
AACT
11
0.25%
SQS/FDFT1
10
0.23%
SQE
10
0.23%
COR
9
0.2%
DET2
9
0.2%
ANS/LDOX
8
0.18%
CPR
8
0.18%
FPPS
8
0.18%
HPPR
7
0.16%
MVK
7
0.16%
DXS
7
0.16%
CYP719
6
0.14%
CCoAOMT
6
0.14%
HMGR
6
0.14%
MVD
6
0.14%
SMO1/SMO2
5
0.11%
ODC
4
0.09%
TYDC_DDC
4
0.09%
DWF1
4
0.09%
TDC
3
0.07%
CHI
3
0.07%
DWF5
3
0.07%
MDS/IspF
3
0.07%
HMGS
3
0.07%
PMK
3
0.07%
MCT/IspD
3
0.07%
CMK/IspE
3
0.07%
IDI
3
0.07%
CYP80F1
2
0.05%
CYP80B1
2
0.05%
CPI1
2
0.05%
HYD1
2
0.05%
DWF7
2
0.05%
HDR/IspH
2
0.05%
HDS/IspG
2
0.05%
DXR
2
0.05%
ADC
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
XMT_MXMT_DXMT
1
0.02%
FK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 552 | 20 | UGT (199) | View species results |
| Alkaloid pathway | 412 | 23 | 7DLGT (92) | View species results |
| Phenylpropanoid pathway | 349 | 11 | POD (139) | View species results |
| Flavonoid pathway | 257 | 9 | UFGT (167) | View species results |
| Rosmarinic acid pathway | 158 | 7 | C4H (56) | View species results |
| Steroid pathway | 97 | 12 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1671 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 330 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| populus_ilicifolia_GWHPABKR000409 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR000410 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR000412 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR001280 | Flavonoid | DFR | medium | pass | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR002278 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR003807 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR003809 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR005242 | Flavonoid | DFR | low | borderline | DFR__00002__sp_Q84KP0_DFRA_PYRCO |
| populus_ilicifolia_GWHPABKR006883 | Flavonoid | DFR | medium | pass | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR007788 | Flavonoid | DFR | medium | borderline | DFR__00003__sp_Q9XES5_DFRA_MALDO |
| populus_ilicifolia_GWHPABKR010128 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR010576 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR012288 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR014585 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR017249 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR018574 | Flavonoid | DFR | medium | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR025208 | Flavonoid | DFR | low | borderline | DFR__00001__sp_Q500U8_TKPR1_ARATH |
| populus_ilicifolia_GWHPABKR025522 | Flavonoid | DFR | medium | pass | DFR__00001__sp_Q500U8_TKPR1_ARATH |