PlantSME Plant secondary metabolism enzyme database

Prunus dulcis (prunus_dulcis)

Imported from atlas release summary for Prunus dulcis.

1644
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.14% Alkaloid pathway 22.81% Phenylpropanoid pathway 20.8% Flavonoid pathway 13.32% Rosmarinic acid pathway 8.52% Steroid pathway 5.41%
Family Distribution
C3'H/CYP98A 5.77% BAHD 5.69% C4H 5.66% UGT 4.72% 7DLGT 4.54% UFGT 4.31% POD 3.65% CYP76 3.65%
Other Families 62.0%
More Families (95)
IFS 128 3.34% F3H 122 3.18% T3O 109 2.84% 4CL 102 2.66% CAD 90 2.35% DWF4/CYP90B1 87 2.27% NMT 76 1.98% F3'H/CYP75B 70 1.83% GS 69 1.8% CODM/T6ODM 66 1.72% H6H 66 1.72% STR 66 1.72% BR6OX2/CYP85A2 55 1.44% IFR 54 1.41% HCT 45 1.17% SMT1/SMT2/SMT3 43 1.12% SGD 42 1.1% CAS 42 1.1% TRI/TRII 40 1.04% LAC 40 1.04% TAT 38 0.99% RAS 36 0.94% CYP71 35 0.91% COMT 34 0.89% T16H 32 0.84% 7DLH 32 0.84% CSE 32 0.84% PMT 31 0.81% FNS 31 0.81% TPS 31 0.81% PYKS 30 0.78% CYP90D1 30 0.78% IO 29 0.76% 16OMT 29 0.76% GES 29 0.76% ANR 26 0.68% NCS 25 0.65% LAMT 25 0.65% G8O/G8H 24 0.63% BBE 21 0.55% CCR 21 0.55% BR6OX1/CYP85A1 21 0.55% SLS 18 0.47% ROT3/CYP90C1 18 0.47% 8HGO 17 0.44% F3'5'H/CYP75A 17 0.44% COR 15 0.39% F5H/CYP84A 15 0.39% CNMT 11 0.29% ANS/LDOX 11 0.29% ISY 10 0.26% CPD/CYP90A1 10 0.26% MPO 9 0.23% PAL 9 0.23% CPR 9 0.23% DFR 8 0.21% CCoAOMT 8 0.21% AACT 8 0.21% CHS 7 0.18% CYP51G1 7 0.18% FPPS 7 0.18% HPPR 6 0.16% SQE 6 0.16% DXS 6 0.16% MVD 6 0.16% HMGR 6 0.16% CYP80B1 5 0.13% TYDC_DDC 5 0.13% CHI 5 0.13% DET2 5 0.13% SQS/FDFT1 5 0.13% GGPPS 5 0.13% HDR/IspH 5 0.13% MVK 4 0.1% CYP719 3 0.08% ODC 3 0.08% DWF1 3 0.08% SMO1/SMO2 3 0.08% DWF7 3 0.08% MCT/IspD 3 0.08% TDC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% FLS 2 0.05% FK 2 0.05% DXR 2 0.05% HDS/IspG 2 0.05% ADC 1 0.03% HYD1 1 0.03% DWF5 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03% HMGS 1 0.03% MDS/IspF 1 0.03% IDI 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 479 19 BAHD (184) View species results
Alkaloid pathway 375 20 7DLGT (89) View species results
Phenylpropanoid pathway 342 12 POD (138) View species results
Flavonoid pathway 219 10 UFGT (155) View species results
Rosmarinic acid pathway 140 7 C4H (46) View species results
Steroid pathway 89 12 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1323 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 299 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
Pdul01G0000250.1 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
Pdul01G0000250.2 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
Pdul01G0000250.3 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
Pdul01G0000250.4 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
Pdul02G0011870.1 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Pdul04G0022450.1 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
Pdul08G0015390.1 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN