PlantSME Plant secondary metabolism enzyme database

Prunus humilis (prunus_humilis)

Imported from atlas release summary for Prunus humilis.

1933
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.01% Alkaloid pathway 22.45% Phenylpropanoid pathway 18.16% Flavonoid pathway 14.17% Rosmarinic acid pathway 10.14% Steroid pathway 5.07%
Family Distribution
C4H 6.25% BAHD 5.91% C3'H/CYP98A 5.78% UGT 5.39% UFGT 5.0% 7DLGT 4.96% CYP76 3.78% IFS 3.75%
Other Families 59.18%
More Families (96)
T3O 142 3.23% 4CL 141 3.21% POD 141 3.21% F3H 134 3.05% DWF4/CYP90B1 89 2.02% NMT 83 1.89% STR 79 1.8% CAD 78 1.77% CODM/T6ODM 77 1.75% BR6OX2/CYP85A2 67 1.52% H6H 66 1.5% F3'H/CYP75B 60 1.36% HCT 59 1.34% TRI/TRII 54 1.23% TAT 54 1.23% GS 52 1.18% SMT1/SMT2/SMT3 52 1.18% CAS 50 1.14% CYP90D1 48 1.09% LAC 46 1.05% CSE 44 1.0% CYP71 42 0.96% SGD 38 0.86% T16H 37 0.84% RAS 37 0.84% TPS 37 0.84% COMT 36 0.82% 7DLH 34 0.77% IFR 34 0.77% GES 33 0.75% PYKS 32 0.73% 16OMT 30 0.68% BR6OX1/CYP85A1 30 0.68% ANR 29 0.66% IO 27 0.61% PMT 27 0.61% F3'5'H/CYP75A 26 0.59% NCS 25 0.57% SLS 24 0.55% COR 22 0.5% FNS 22 0.5% CCR 22 0.5% 8HGO 20 0.45% LAMT 20 0.45% G8O/G8H 18 0.41% BBE 17 0.39% CPD/CYP90A1 17 0.39% F5H/CYP84A 14 0.32% CHS 12 0.27% ISY 11 0.25% CNMT 11 0.25% ROT3/CYP90C1 11 0.25% TYDC_DDC 10 0.23% DFR 10 0.23% MPO 9 0.2% PAL 9 0.2% CYP51G1 9 0.2% CYP80B1 8 0.18% ANS/LDOX 8 0.18% CCoAOMT 8 0.18% DXS 8 0.18% FPPS 8 0.18% SQE 7 0.16% SQS/FDFT1 7 0.16% SMO1/SMO2 7 0.16% TDC 6 0.14% HPPR 6 0.14% AACT 6 0.14% CYP719 5 0.11% MVK 5 0.11% MVD 5 0.11% GGPPS 5 0.11% CHI 4 0.09% CPR 4 0.09% DET2 4 0.09% HMGR 3 0.07% ODC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% FK 2 0.05% DWF5 2 0.05% MCT/IspD 2 0.05% HDS/IspG 2 0.05% HDR/IspH 2 0.05% CMK/IspE 2 0.05% PMK 2 0.05% DXR 2 0.05% XMT_MXMT_DXMT 1 0.02% ADC 1 0.02% FLS 1 0.02% DWF1 1 0.02% HYD1 1 0.02% DWF7 1 0.02% CPI1 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02% HMGS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 580 19 UGT (231) View species results
Alkaloid pathway 434 24 7DLGT (126) View species results
Phenylpropanoid pathway 351 12 POD (135) View species results
Flavonoid pathway 274 11 UFGT (206) View species results
Rosmarinic acid pathway 196 7 C4H (81) View species results
Steroid pathway 98 11 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1568 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 356 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status Best Target
prunus_humilis_GWHPBCKI016633 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
prunus_humilis_GWHPBCKI016635 Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
prunus_humilis_GWHPBCKI026504 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI