PlantSME Plant secondary metabolism enzyme database

Prunus salicina (prunus_salicina)

Imported from atlas release summary for Prunus salicina.

1434
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.96% Phenylpropanoid pathway 22.52% Alkaloid pathway 22.04% Rosmarinic acid pathway 10.18% Flavonoid pathway 8.23% Steroid pathway 6.07%
Family Distribution
C4H 7.96% BAHD 7.14% C3'H/CYP98A 4.64% 4CL 3.62% F3H 3.6% CYP76 3.54% UGT 3.51% POD 3.49%
Other Families 62.5%
More Families (96)
IFS 114 3.13% CODM/T6ODM 79 2.17% CAD 77 2.11% 7DLGT 75 2.06% G8O/G8H 75 2.06% T3O 70 1.92% STR 68 1.87% NMT 67 1.84% TAT 65 1.78% HCT 64 1.76% CAS 64 1.76% F3'H/CYP75B 62 1.7% UFGT 62 1.7% T16H 60 1.65% DWF4/CYP90B1 58 1.59% FNS 54 1.48% TPS 54 1.48% GES 52 1.43% H6H 52 1.43% GS 48 1.32% LAC 47 1.29% TRI/TRII 44 1.21% CSE 44 1.21% RAS 43 1.18% IFR 39 1.07% SLS 35 0.96% CYP71 34 0.93% PMT 31 0.85% F3'5'H/CYP75A 31 0.85% F5H/CYP84A 31 0.85% SMT1/SMT2/SMT3 30 0.82% PYKS 29 0.8% BR6OX1/CYP85A1 26 0.71% SGD 25 0.69% BR6OX2/CYP85A2 24 0.66% LAMT 22 0.6% NCS 21 0.58% ANR 21 0.58% CCR 21 0.58% COR 20 0.55% IO 19 0.52% CPD/CYP90A1 19 0.52% COMT 17 0.47% CYP90D1 16 0.44% DFR 15 0.41% MPO 14 0.38% ROT3/CYP90C1 13 0.36% 7DLH 12 0.33% ISY 10 0.27% 8HGO 9 0.25% CNMT 9 0.25% 6OMT_4OMT_SOMT 9 0.25% PAL 9 0.25% CYP51G1 9 0.25% TYDC_DDC 8 0.22% CCoAOMT 8 0.22% HPPR 8 0.22% SQS/FDFT1 8 0.22% AACT 8 0.22% CYP719 7 0.19% CHS 7 0.19% TDC 6 0.16% SQE 6 0.16% MVD 6 0.16% GGPPS 6 0.16% FPPS 6 0.16% CYP80B1 5 0.14% ANS/LDOX 5 0.14% SMO1/SMO2 5 0.14% DXS 5 0.14% 16OMT 4 0.11% CHI 4 0.11% FLS 4 0.11% CPR 4 0.11% BBE 3 0.08% ODC 3 0.08% MVK 3 0.08% HDR/IspH 3 0.08% HMGR 3 0.08% DWF1 2 0.05% DET2 2 0.05% DWF5 2 0.05% FK 2 0.05% DXR 2 0.05% HMGS 2 0.05% MCT/IspD 2 0.05% CYP80F1 1 0.03% ADC 1 0.03% CPI1 1 0.03% HYD1 1 0.03% DWF7 1 0.03% MDS/IspF 1 0.03% CMK/IspE 1 0.03% PMK 1 0.03% IDI 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 444 18 BAHD (202) View species results
Phenylpropanoid pathway 323 12 POD (120) View species results
Alkaloid pathway 316 24 GES (48) View species results
Rosmarinic acid pathway 146 7 TAT (56) View species results
Flavonoid pathway 118 12 UFGT (48) View species results
Steroid pathway 87 11 CAS (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1309 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 367 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
prunus_salicina_evm.model.Contig13.20 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.Contig20.11 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.Contig20.9 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.LG01.1970 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.LG02.2065 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.LG02.2068 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.LG02.2071 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.LG02.827 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG03.1032 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG03.2838 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG03.973 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG04.1990 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG04.2678 Steroid CYP90D1 low borderline
prunus_salicina_evm.model.LG06.3146 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG07.1157 Steroid CYP90D1 medium borderline
prunus_salicina_evm.model.LG07.611 Steroid CYP90D1 low borderline