PlantSME Plant secondary metabolism enzyme database

Pseudobryum cinclidioides (pseudobryum_cinclidioides)

Imported from atlas release summary for Pseudobryum cinclidioides.

658
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.66% Phenylpropanoid pathway 22.64% Alkaloid pathway 20.52% Flavonoid pathway 14.13% Rosmarinic acid pathway 9.42% Steroid pathway 5.62%
Family Distribution
C4H 7.02% C3'H/CYP98A 5.93% BAHD 5.88% POD 5.08% CYP76 4.91% 4CL 4.34% IFS 3.76% NMT 3.08%
Other Families 60.01%
More Families (94)
STR 47 2.68% BR6OX2/CYP85A2 44 2.51% UGT 44 2.51% 7DLGT 42 2.4% UFGT 42 2.4% F3H 42 2.4% T3O 40 2.28% IFR 34 1.94% DWF4/CYP90B1 34 1.94% GS 31 1.77% PYKS 30 1.71% F3'H/CYP75B 30 1.71% CODM/T6ODM 27 1.54% IO 25 1.43% H6H 22 1.25% CHS 20 1.14% T16H 19 1.08% CAD 19 1.08% SMT1/SMT2/SMT3 19 1.08% PAL 18 1.03% TRI/TRII 16 0.91% F3'5'H/CYP75A 16 0.91% CYP71 16 0.91% G8O/G8H 15 0.86% HCT 15 0.86% LAC 15 0.86% NCS 14 0.8% CAS 14 0.8% CYP90D1 14 0.8% RAS 13 0.74% 7DLH 12 0.68% FNS 12 0.68% SLS 10 0.57% CPD/CYP90A1 10 0.57% CCR 9 0.51% CSE 9 0.51% CNMT 8 0.46% MPO 8 0.46% COMT 8 0.46% 16OMT 7 0.4% ANR 7 0.4% DFR 7 0.4% BR6OX1/CYP85A1 7 0.4% GGPPS 7 0.4% AACT 7 0.4% LAMT 6 0.34% 8HGO 6 0.34% TDC 6 0.34% SGD 6 0.34% COR 6 0.34% CPR 6 0.34% BBE 5 0.29% TAT 5 0.29% DWF5 5 0.29% TPS 5 0.29% CYP80F1 4 0.23% CYP719 4 0.23% GES 4 0.23% CYP80B1 4 0.23% ANS/LDOX 4 0.23% F5H/CYP84A 4 0.23% SQS/FDFT1 4 0.23% MVK 4 0.23% ADC 3 0.17% PMT 3 0.17% DET2 3 0.17% SQE 3 0.17% HDS/IspG 3 0.17% IDI 3 0.17% CMK/IspE 3 0.17% 6OMT_4OMT_SOMT 2 0.11% ISY 2 0.11% FLS 2 0.11% CHI 2 0.11% CCoAOMT 2 0.11% DWF1 2 0.11% CYP51G1 2 0.11% HYD1 2 0.11% SMO1/SMO2 2 0.11% MCT/IspD 2 0.11% DXR 2 0.11% MVD 2 0.11% DXS 2 0.11% HDR/IspH 2 0.11% TYDC_DDC 1 0.06% HPPR 1 0.06% CPI1 1 0.06% DWF7 1 0.06% ROT3/CYP90C1 1 0.06% PMK 1 0.06% HMGS 1 0.06% MDS/IspF 1 0.06% FPPS 1 0.06% HMGR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 182 21 BAHD (70) View species results
Phenylpropanoid pathway 149 12 POD (82) View species results
Alkaloid pathway 135 17 7DLGT (24) View species results
Flavonoid pathway 93 10 UFGT (39) View species results
Rosmarinic acid pathway 62 7 C4H (30) View species results
Steroid pathway 37 12 CAS (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 690 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 131 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Pcin2015410265110 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Pcin2028000290320 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Pcin2032040298580 Alkaloid NMT medium borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Pcin2035040302170 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH