Pseudobryum cinclidioides (pseudobryum_cinclidioides)
Imported from atlas release summary for Pseudobryum cinclidioides.
658
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
658
Candidate Genes
C4H
7.02%
C3'H/CYP98A
5.93%
BAHD
5.88%
POD
5.08%
CYP76
4.91%
4CL
4.34%
IFS
3.76%
NMT
3.08%
Other Families
60.01%
More Families (94)
STR
47
2.68%
BR6OX2/CYP85A2
44
2.51%
UGT
44
2.51%
7DLGT
42
2.4%
UFGT
42
2.4%
F3H
42
2.4%
T3O
40
2.28%
IFR
34
1.94%
DWF4/CYP90B1
34
1.94%
GS
31
1.77%
PYKS
30
1.71%
F3'H/CYP75B
30
1.71%
CODM/T6ODM
27
1.54%
IO
25
1.43%
H6H
22
1.25%
CHS
20
1.14%
T16H
19
1.08%
CAD
19
1.08%
SMT1/SMT2/SMT3
19
1.08%
PAL
18
1.03%
TRI/TRII
16
0.91%
F3'5'H/CYP75A
16
0.91%
CYP71
16
0.91%
G8O/G8H
15
0.86%
HCT
15
0.86%
LAC
15
0.86%
NCS
14
0.8%
CAS
14
0.8%
CYP90D1
14
0.8%
RAS
13
0.74%
7DLH
12
0.68%
FNS
12
0.68%
SLS
10
0.57%
CPD/CYP90A1
10
0.57%
CCR
9
0.51%
CSE
9
0.51%
CNMT
8
0.46%
MPO
8
0.46%
COMT
8
0.46%
16OMT
7
0.4%
ANR
7
0.4%
DFR
7
0.4%
BR6OX1/CYP85A1
7
0.4%
GGPPS
7
0.4%
AACT
7
0.4%
LAMT
6
0.34%
8HGO
6
0.34%
TDC
6
0.34%
SGD
6
0.34%
COR
6
0.34%
CPR
6
0.34%
BBE
5
0.29%
TAT
5
0.29%
DWF5
5
0.29%
TPS
5
0.29%
CYP80F1
4
0.23%
CYP719
4
0.23%
GES
4
0.23%
CYP80B1
4
0.23%
ANS/LDOX
4
0.23%
F5H/CYP84A
4
0.23%
SQS/FDFT1
4
0.23%
MVK
4
0.23%
ADC
3
0.17%
PMT
3
0.17%
DET2
3
0.17%
SQE
3
0.17%
HDS/IspG
3
0.17%
IDI
3
0.17%
CMK/IspE
3
0.17%
6OMT_4OMT_SOMT
2
0.11%
ISY
2
0.11%
FLS
2
0.11%
CHI
2
0.11%
CCoAOMT
2
0.11%
DWF1
2
0.11%
CYP51G1
2
0.11%
HYD1
2
0.11%
SMO1/SMO2
2
0.11%
MCT/IspD
2
0.11%
DXR
2
0.11%
MVD
2
0.11%
DXS
2
0.11%
HDR/IspH
2
0.11%
TYDC_DDC
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
ROT3/CYP90C1
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
MDS/IspF
1
0.06%
FPPS
1
0.06%
HMGR
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 182 | 21 | BAHD (70) | View species results |
| Phenylpropanoid pathway | 149 | 12 | POD (82) | View species results |
| Alkaloid pathway | 135 | 17 | 7DLGT (24) | View species results |
| Flavonoid pathway | 93 | 10 | UFGT (39) | View species results |
| Rosmarinic acid pathway | 62 | 7 | C4H (30) | View species results |
| Steroid pathway | 37 | 12 | CAS (12) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 690 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 131 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pcin1962830181930 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Pcin1966630187190 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Pcin1970400191830 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pcin1971360193050 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pcin1973630195560 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pcin1975420198380 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pcin1978220201580 | Phenylpropanoid | POD | medium | pass | POD__00025__sp_Q9SRZ4_PRX2C_ARATH |
| Pcin1978220201610 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Pcin1979920203670 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Pcin1980760205160 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pcin1984370210850 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Pcin1990890221200 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Pcin1991040221420 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Pcin1992070223170 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Pcin1993730225870 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Pcin1994000226380 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Pcin1996980230930 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Pcin1998130232920 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pcin2000950238570 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Pcin2001360239270 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pcin2001590239740 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pcin2007910250830 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pcin2008130251180 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pcin2008800252470 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pcin2011840258430 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Pcin2014700264050 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pcin2021350276650 | Phenylpropanoid | POD | low | borderline | POD__00018__sp_Q8H0V5_OCP3_ARATH |
| Pcin2023260280730 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Pcin2024650284000 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pcin2025390285590 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Pcin2026820287860 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Pcin2028710291660 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| Pcin2028810291750 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |
| Pcin2029160292710 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Pcin2030040294790 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| Pcin2039650304160 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Pcin2039810304240 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Pcin2089810305110 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Pcin2089810305120 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |