Pseudobryum cinclidioides (pseudobryum_cinclidioides)
Imported from atlas release summary for Pseudobryum cinclidioides.
658
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
658
Candidate Genes
C4H
7.02%
C3'H/CYP98A
5.93%
BAHD
5.88%
POD
5.08%
CYP76
4.91%
4CL
4.34%
IFS
3.76%
NMT
3.08%
Other Families
60.01%
More Families (94)
STR
47
2.68%
BR6OX2/CYP85A2
44
2.51%
UGT
44
2.51%
7DLGT
42
2.4%
UFGT
42
2.4%
F3H
42
2.4%
T3O
40
2.28%
IFR
34
1.94%
DWF4/CYP90B1
34
1.94%
GS
31
1.77%
PYKS
30
1.71%
F3'H/CYP75B
30
1.71%
CODM/T6ODM
27
1.54%
IO
25
1.43%
H6H
22
1.25%
CHS
20
1.14%
T16H
19
1.08%
CAD
19
1.08%
SMT1/SMT2/SMT3
19
1.08%
PAL
18
1.03%
TRI/TRII
16
0.91%
F3'5'H/CYP75A
16
0.91%
CYP71
16
0.91%
G8O/G8H
15
0.86%
HCT
15
0.86%
LAC
15
0.86%
NCS
14
0.8%
CAS
14
0.8%
CYP90D1
14
0.8%
RAS
13
0.74%
7DLH
12
0.68%
FNS
12
0.68%
SLS
10
0.57%
CPD/CYP90A1
10
0.57%
CCR
9
0.51%
CSE
9
0.51%
CNMT
8
0.46%
MPO
8
0.46%
COMT
8
0.46%
16OMT
7
0.4%
ANR
7
0.4%
DFR
7
0.4%
BR6OX1/CYP85A1
7
0.4%
GGPPS
7
0.4%
AACT
7
0.4%
LAMT
6
0.34%
8HGO
6
0.34%
TDC
6
0.34%
SGD
6
0.34%
COR
6
0.34%
CPR
6
0.34%
BBE
5
0.29%
TAT
5
0.29%
DWF5
5
0.29%
TPS
5
0.29%
CYP80F1
4
0.23%
CYP719
4
0.23%
GES
4
0.23%
CYP80B1
4
0.23%
ANS/LDOX
4
0.23%
F5H/CYP84A
4
0.23%
SQS/FDFT1
4
0.23%
MVK
4
0.23%
ADC
3
0.17%
PMT
3
0.17%
DET2
3
0.17%
SQE
3
0.17%
HDS/IspG
3
0.17%
IDI
3
0.17%
CMK/IspE
3
0.17%
6OMT_4OMT_SOMT
2
0.11%
ISY
2
0.11%
FLS
2
0.11%
CHI
2
0.11%
CCoAOMT
2
0.11%
DWF1
2
0.11%
CYP51G1
2
0.11%
HYD1
2
0.11%
SMO1/SMO2
2
0.11%
MCT/IspD
2
0.11%
DXR
2
0.11%
MVD
2
0.11%
DXS
2
0.11%
HDR/IspH
2
0.11%
TYDC_DDC
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
ROT3/CYP90C1
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
MDS/IspF
1
0.06%
FPPS
1
0.06%
HMGR
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 182 | 21 | BAHD (70) | View species results |
| Phenylpropanoid pathway | 149 | 12 | POD (82) | View species results |
| Alkaloid pathway | 135 | 17 | 7DLGT (24) | View species results |
| Flavonoid pathway | 93 | 10 | UFGT (39) | View species results |
| Rosmarinic acid pathway | 62 | 7 | C4H (30) | View species results |
| Steroid pathway | 37 | 12 | CAS (12) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 690 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 131 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pcin1940030155450 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Pcin1940030155460 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Pcin1974110196440 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Pcin2011160257070 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Pcin2013330261470 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Pcin2014960264530 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Pcin2020800275630 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Pcin1221240007420 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcin1249690012610 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Pcin1437380019000 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Pcin1568810033020 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcin1602180034990 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Pcin1662070043290 | Alkaloid | NMT | low | borderline | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| Pcin1702600045980 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Pcin1709570047300 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Pcin1729870052690 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pcin1746400058330 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Pcin1757070060560 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Pcin1773460067660 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcin1796710072410 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcin1825380078860 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Pcin1829420080690 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcin1836130085160 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcin1850580092350 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Pcin1851500093090 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Pcin1853840094510 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Pcin1857100096100 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Pcin1864570097880 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Pcin1868270099550 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcin1887290112880 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Pcin1904430123810 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Pcin1906620125110 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| Pcin1909900127730 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcin1913050130910 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcin1914840132950 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Pcin1915870133870 | Alkaloid | NMT | low | borderline | NMT__00020__sp_O23372_ATXR3_ARATH |
| Pcin1922790140330 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcin1922830140410 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Pcin1922910140490 | Alkaloid | NMT | medium | pass | NMT__00019__sp_O22781_SUVH2_ARATH |
| Pcin1927500144820 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| Pcin1936520152010 | Alkaloid | NMT | low | borderline | NMT__00021__sp_O64827_SUVR5_ARATH |
| Pcin1939990155400 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Pcin1945680161510 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Pcin1945680161520 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| Pcin1949750166080 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Pcin1955310171740 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Pcin1961250179780 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcin1969370190000 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Pcin1980560204810 | Alkaloid | NMT | medium | borderline | NMT__00043__sp_Q8H0D2_DXMT1_COFAR |
| Pcin1984040210500 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |