PlantSME Plant secondary metabolism enzyme database

Pterocarya stenoptera (pterocarya_stenoptera)

Imported from atlas release summary for Pterocarya stenoptera.

2910
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.42% Phenylpropanoid pathway 23.4% Alkaloid pathway 20.17% Flavonoid pathway 12.54% Rosmarinic acid pathway 9.14% Steroid pathway 6.32%
Family Distribution
C4H 6.35% C3'H/CYP98A 6.04% BAHD 5.23% IFS 4.3% UGT 4.13% CYP76 3.97% POD 3.93% 7DLGT 3.61%
Other Families 62.45%
More Families (96)
T3O 246 3.38% UFGT 237 3.25% F3H 225 3.09% 4CL 222 3.05% DWF4/CYP90B1 177 2.43% BR6OX2/CYP85A2 146 2.0% CAD 144 1.98% F3'H/CYP75B 143 1.96% H6H 130 1.78% CODM/T6ODM 113 1.55% NMT 106 1.45% SMT1/SMT2/SMT3 103 1.41% TRI/TRII 98 1.35% LAC 98 1.35% CYP71 96 1.32% CAS 88 1.21% T16H 82 1.13% TPS 82 1.13% CSE 81 1.11% CYP90D1 79 1.08% GES 78 1.07% HCT 78 1.07% STR 77 1.06% GS 76 1.04% G8O/G8H 70 0.96% COMT 70 0.96% PYKS 63 0.86% 7DLH 62 0.85% TAT 61 0.84% IFR 60 0.82% NCS 52 0.71% PMT 51 0.7% FNS 48 0.66% 16OMT 45 0.62% LAMT 45 0.62% F5H/CYP84A 45 0.62% IO 44 0.6% SGD 43 0.59% RAS 41 0.56% PAL 39 0.54% 8HGO 38 0.52% ANR 34 0.47% SLS 33 0.45% DFR 33 0.45% CCR 33 0.45% F3'5'H/CYP75A 31 0.43% COR 30 0.41% ANS/LDOX 28 0.38% BR6OX1/CYP85A1 28 0.38% CPD/CYP90A1 27 0.37% CNMT 21 0.29% SQE 21 0.29% CHS 20 0.27% ROT3/CYP90C1 20 0.27% CYP719 19 0.26% CCoAOMT 19 0.26% CPR 18 0.25% GGPPS 18 0.25% TYDC_DDC 16 0.22% FPPS 15 0.21% CYP51G1 14 0.19% MPO 12 0.16% SQS/FDFT1 12 0.16% HPPR 11 0.15% CYP80B1 10 0.14% HMGR 10 0.14% XMT_MXMT_DXMT 9 0.12% DXS 9 0.12% ISY 8 0.11% DET2 8 0.11% MVK 8 0.11% AACT 7 0.1% CHI 6 0.08% SMO1/SMO2 6 0.08% HMGS 6 0.08% MVD 6 0.08% TDC 5 0.07% 6OMT_4OMT_SOMT 5 0.07% FLS 5 0.07% ADC 4 0.05% HDR/IspH 4 0.05% PMK 4 0.05% BBE 3 0.04% DWF1 3 0.04% DWF7 3 0.04% MCT/IspD 3 0.04% CMK/IspE 3 0.04% MDS/IspF 3 0.04% DXR 3 0.04% IDI 3 0.04% ODC 2 0.03% CPI1 2 0.03% HYD1 2 0.03% FK 2 0.03% DWF5 2 0.03% HDS/IspG 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 827 18 BAHD (300) View species results
Phenylpropanoid pathway 681 13 POD (266) View species results
Alkaloid pathway 587 26 TRI/TRII (82) View species results
Flavonoid pathway 365 11 UFGT (223) View species results
Rosmarinic acid pathway 266 7 C4H (107) View species results
Steroid pathway 184 12 SMT1/SMT2/SMT3 (75) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2877 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 500 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: MDS/IspF
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Gene Pathway Family Confidence Status Best Target
Pstescaffold1250105430.1 Terpenoid MDS/IspF high pass MDS_IspF__00002__sp_Q9CAK8_ISPF_ARATH
Pstescaffold13760109640.1 Terpenoid MDS/IspF high pass MDS_IspF__00002__sp_Q9CAK8_ISPF_ARATH
Pstescaffold85910386460.1 Terpenoid MDS/IspF high pass MDS_IspF__00002__sp_Q9CAK8_ISPF_ARATH