Pugionium cornutum (pugionium_cornutum)
Imported from atlas release summary for Pugionium cornutum.
1214
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1214
Candidate Genes
BAHD
6.7%
C3'H/CYP98A
5.89%
C4H
5.6%
POD
4.62%
4CL
4.0%
IFS
3.87%
CYP76
3.87%
T3O
3.32%
Other Families
62.13%
More Families (97)
NMT
91
2.96%
UGT
90
2.93%
UFGT
88
2.86%
F3H
87
2.83%
7DLGT
86
2.8%
DWF4/CYP90B1
74
2.41%
STR
64
2.08%
BR6OX2/CYP85A2
60
1.95%
CSE
54
1.76%
SMT1/SMT2/SMT3
51
1.66%
CODM/T6ODM
48
1.56%
F3'H/CYP75B
48
1.56%
IFR
48
1.56%
H6H
47
1.53%
CYP71
47
1.53%
SGD
43
1.4%
PYKS
37
1.2%
LAC
37
1.2%
CAD
36
1.17%
TAT
29
0.94%
TRI/TRII
27
0.88%
BBE
27
0.88%
T16H
25
0.81%
HCT
25
0.81%
PAL
24
0.78%
SLS
23
0.75%
LAMT
23
0.75%
RAS
23
0.75%
IO
21
0.68%
GS
20
0.65%
COMT
20
0.65%
BR6OX1/CYP85A1
20
0.65%
ANR
19
0.62%
F5H/CYP84A
19
0.62%
CCR
19
0.62%
CYP90D1
19
0.62%
CAS
19
0.62%
8HGO
16
0.52%
G8O/G8H
16
0.52%
16OMT
15
0.49%
FNS
14
0.46%
CPD/CYP90A1
14
0.46%
PMT
13
0.42%
GGPPS
13
0.42%
GES
12
0.39%
CNMT
12
0.39%
F3'5'H/CYP75A
12
0.39%
CYP51G1
12
0.39%
DWF1
12
0.39%
ANS/LDOX
11
0.36%
TPS
10
0.33%
CPR
9
0.29%
NCS
8
0.26%
COR
8
0.26%
DFR
8
0.26%
FPPS
8
0.26%
AACT
8
0.26%
DWF5
7
0.23%
SQS/FDFT1
7
0.23%
MVD
7
0.23%
CCoAOMT
6
0.2%
SMO1/SMO2
6
0.2%
ROT3/CYP90C1
6
0.2%
SQE
6
0.2%
IDI
6
0.2%
MPO
5
0.16%
ADC
5
0.16%
CHS
5
0.16%
DET2
5
0.16%
DWF7
5
0.16%
MCT/IspD
5
0.16%
MVK
5
0.16%
CYP80F1
4
0.13%
7DLH
4
0.13%
ISY
4
0.13%
DXS
4
0.13%
CYP719
3
0.1%
TDC
3
0.1%
XMT_MXMT_DXMT
3
0.1%
CYP80B1
3
0.1%
CHI
3
0.1%
CMK/IspE
3
0.1%
FLS
2
0.07%
HPPR
2
0.07%
PMK
2
0.07%
HMGR
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
6OMT_4OMT_SOMT
1
0.03%
TYDC_DDC
1
0.03%
ODC
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
MDS/IspF
1
0.03%
HDS/IspG
1
0.03%
DXR
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 360 | 19 | BAHD (161) | View species results |
| Phenylpropanoid pathway | 288 | 11 | POD (125) | View species results |
| Alkaloid pathway | 251 | 18 | NMT (50) | View species results |
| Flavonoid pathway | 130 | 8 | UFGT (82) | View species results |
| Rosmarinic acid pathway | 111 | 7 | C4H (43) | View species results |
| Steroid pathway | 74 | 11 | SMT1/SMT2/SMT3 (27) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1123 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 254 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| pugionium_cornutum_Pco11259.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco12704.t2 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco13937.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco14564.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco15376.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco16421.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco16447.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco17405.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco17406.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco18265.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco19160.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco19287.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco19356.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco19433.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco19663.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco20702.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco20944.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco21949.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco23834.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco23854.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco24463.t1 | Rosmarinic Acid | 4CL | medium | pass |
| pugionium_cornutum_Pco26129.t1 | Rosmarinic Acid | 4CL | low | borderline |
| pugionium_cornutum_Pco26833.t1 | Rosmarinic Acid | 4CL | low | borderline |