PlantSME Plant secondary metabolism enzyme database

Pugionium cornutum (pugionium_cornutum)

Imported from atlas release summary for Pugionium cornutum.

1214
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.65% Phenylpropanoid pathway 23.72% Alkaloid pathway 20.68% Flavonoid pathway 10.71% Rosmarinic acid pathway 9.14% Steroid pathway 6.1%
Family Distribution
BAHD 6.7% C3'H/CYP98A 5.89% C4H 5.6% POD 4.62% 4CL 4.0% IFS 3.87% CYP76 3.87% T3O 3.32%
Other Families 62.13%
More Families (97)
NMT 91 2.96% UGT 90 2.93% UFGT 88 2.86% F3H 87 2.83% 7DLGT 86 2.8% DWF4/CYP90B1 74 2.41% STR 64 2.08% BR6OX2/CYP85A2 60 1.95% CSE 54 1.76% SMT1/SMT2/SMT3 51 1.66% CODM/T6ODM 48 1.56% F3'H/CYP75B 48 1.56% IFR 48 1.56% H6H 47 1.53% CYP71 47 1.53% SGD 43 1.4% PYKS 37 1.2% LAC 37 1.2% CAD 36 1.17% TAT 29 0.94% TRI/TRII 27 0.88% BBE 27 0.88% T16H 25 0.81% HCT 25 0.81% PAL 24 0.78% SLS 23 0.75% LAMT 23 0.75% RAS 23 0.75% IO 21 0.68% GS 20 0.65% COMT 20 0.65% BR6OX1/CYP85A1 20 0.65% ANR 19 0.62% F5H/CYP84A 19 0.62% CCR 19 0.62% CYP90D1 19 0.62% CAS 19 0.62% 8HGO 16 0.52% G8O/G8H 16 0.52% 16OMT 15 0.49% FNS 14 0.46% CPD/CYP90A1 14 0.46% PMT 13 0.42% GGPPS 13 0.42% GES 12 0.39% CNMT 12 0.39% F3'5'H/CYP75A 12 0.39% CYP51G1 12 0.39% DWF1 12 0.39% ANS/LDOX 11 0.36% TPS 10 0.33% CPR 9 0.29% NCS 8 0.26% COR 8 0.26% DFR 8 0.26% FPPS 8 0.26% AACT 8 0.26% DWF5 7 0.23% SQS/FDFT1 7 0.23% MVD 7 0.23% CCoAOMT 6 0.2% SMO1/SMO2 6 0.2% ROT3/CYP90C1 6 0.2% SQE 6 0.2% IDI 6 0.2% MPO 5 0.16% ADC 5 0.16% CHS 5 0.16% DET2 5 0.16% DWF7 5 0.16% MCT/IspD 5 0.16% MVK 5 0.16% CYP80F1 4 0.13% 7DLH 4 0.13% ISY 4 0.13% DXS 4 0.13% CYP719 3 0.1% TDC 3 0.1% XMT_MXMT_DXMT 3 0.1% CYP80B1 3 0.1% CHI 3 0.1% CMK/IspE 3 0.1% FLS 2 0.07% HPPR 2 0.07% PMK 2 0.07% HMGR 2 0.07% HMGS 2 0.07% HDR/IspH 2 0.07% 6OMT_4OMT_SOMT 1 0.03% TYDC_DDC 1 0.03% ODC 1 0.03% HYD1 1 0.03% FK 1 0.03% CPI1 1 0.03% MDS/IspF 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 360 19 BAHD (161) View species results
Phenylpropanoid pathway 288 11 POD (125) View species results
Alkaloid pathway 251 18 NMT (50) View species results
Flavonoid pathway 130 8 UFGT (82) View species results
Rosmarinic acid pathway 111 7 C4H (43) View species results
Steroid pathway 74 11 SMT1/SMT2/SMT3 (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1123 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 254 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
pugionium_cornutum_Pco05908.t1 Terpenoid TPS medium pass TPS__00044__sp_A0A348AUW1_TPS1G_CAMHI
pugionium_cornutum_Pco08105.t1 Terpenoid TPS low borderline TPS__00015__sp_A0A1L6Z3A5_TPS5_PSEAD
pugionium_cornutum_Pco09271.t1 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
pugionium_cornutum_Pco12138.t1 Terpenoid TPS medium pass TPS__00033__sp_A0A2K9RFY0_TPS4_VITAC
pugionium_cornutum_Pco21341.t1 Terpenoid TPS medium pass TPS__00076__sp_D0UZK2_TPS1_CITSI
pugionium_cornutum_Pco21342.t1 Terpenoid TPS medium pass TPS__00044__sp_A0A348AUW1_TPS1G_CAMHI
pugionium_cornutum_Pco21343.t1 Terpenoid TPS medium pass TPS__00044__sp_A0A348AUW1_TPS1G_CAMHI
pugionium_cornutum_Pco26555.t1 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
pugionium_cornutum_Pco26556.t1 Terpenoid TPS medium pass TPS__00005__sp_A0A140KFG9_TPS1_CAMBE
pugionium_cornutum_Pco28282.t1 Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA