PlantSME Plant secondary metabolism enzyme database

Pugionium dolabratum (pugionium_dolabratum)

Imported from atlas release summary for Pugionium dolabratum.

1173
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.96% Phenylpropanoid pathway 24.89% Alkaloid pathway 20.89% Flavonoid pathway 10.66% Rosmarinic acid pathway 9.12% Steroid pathway 6.48%
Family Distribution
BAHD 6.63% C3'H/CYP98A 5.67% C4H 5.57% POD 5.09% 4CL 4.3% CYP76 3.72% IFS 3.69% T3O 3.04%
Other Families 62.3%
More Families (95)
NMT 87 2.97% UFGT 86 2.94% UGT 86 2.94% 7DLGT 82 2.8% F3H 82 2.8% STR 66 2.25% BR6OX2/CYP85A2 61 2.08% SMT1/SMT2/SMT3 53 1.81% DWF4/CYP90B1 52 1.78% CYP71 47 1.61% SGD 44 1.5% CODM/T6ODM 44 1.5% CSE 44 1.5% F3'H/CYP75B 42 1.43% IFR 41 1.4% H6H 39 1.33% PYKS 36 1.23% LAC 36 1.23% CAD 35 1.2% TRI/TRII 30 1.02% TAT 28 0.96% T16H 27 0.92% HCT 27 0.92% BBE 25 0.85% PAL 24 0.82% RAS 24 0.82% BR6OX1/CYP85A1 24 0.82% ANR 22 0.75% COMT 21 0.72% CAS 21 0.72% IO 20 0.68% LAMT 19 0.65% SLS 19 0.65% FNS 19 0.65% CCR 19 0.65% GS 18 0.61% 8HGO 17 0.58% F5H/CYP84A 17 0.58% CYP90D1 17 0.58% 16OMT 16 0.55% G8O/G8H 16 0.55% GGPPS 13 0.44% CYP51G1 12 0.41% CPD/CYP90A1 12 0.41% PMT 11 0.38% NCS 11 0.38% COR 10 0.34% CNMT 10 0.34% ANS/LDOX 10 0.34% CPR 10 0.34% GES 9 0.31% 7DLH 9 0.31% F3'5'H/CYP75A 9 0.31% DFR 8 0.27% ROT3/CYP90C1 8 0.27% FPPS 8 0.27% TPS 8 0.27% MPO 7 0.24% CCoAOMT 7 0.24% DET2 7 0.24% AACT 7 0.24% CYP80B1 6 0.2% SQS/FDFT1 6 0.2% SMO1/SMO2 6 0.2% MVD 6 0.2% CYP719 5 0.17% CHS 5 0.17% DWF1 5 0.17% SQE 5 0.17% MCT/IspD 5 0.17% ISY 4 0.14% CHI 4 0.14% IDI 4 0.14% MVK 4 0.14% CMK/IspE 4 0.14% ADC 3 0.1% CYP80F1 3 0.1% DWF7 3 0.1% DWF5 3 0.1% DXS 3 0.1% TDC 2 0.07% HPPR 2 0.07% PMK 2 0.07% HDR/IspH 2 0.07% HMGR 2 0.07% HMGS 2 0.07% ODC 1 0.03% XMT_MXMT_DXMT 1 0.03% TYDC_DDC 1 0.03% HYD1 1 0.03% FK 1 0.03% CPI1 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 328 19 BAHD (152) View species results
Phenylpropanoid pathway 292 11 POD (139) View species results
Alkaloid pathway 245 17 NMT (48) View species results
Flavonoid pathway 125 7 UFGT (79) View species results
Rosmarinic acid pathway 107 7 C4H (39) View species results
Steroid pathway 76 11 SMT1/SMT2/SMT3 (31) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1041 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 245 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status Best Target
pugionium_dolabratum_Pdo28867.t1 Terpenoid CYP76 medium borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
pugionium_dolabratum_Pdo28868.t1 Terpenoid CYP76 medium borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
pugionium_dolabratum_Pdo28979.t1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
pugionium_dolabratum_Pdo28980.t1 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
pugionium_dolabratum_Pdo28981.t1 Terpenoid CYP76 medium pass CYP76__00013__sp_D1MI46_C76BA_SWEMU
pugionium_dolabratum_Pdo29371.t1 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
pugionium_dolabratum_Pdo29372.t1 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
pugionium_dolabratum_Pdo30067.t1 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
pugionium_dolabratum_Pdo30793.t1 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO