Pugionium dolabratum (pugionium_dolabratum)
Imported from atlas release summary for Pugionium dolabratum.
1173
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1173
Candidate Genes
BAHD
6.63%
C3'H/CYP98A
5.67%
C4H
5.57%
POD
5.09%
4CL
4.3%
CYP76
3.72%
IFS
3.69%
T3O
3.04%
Other Families
62.3%
More Families (95)
NMT
87
2.97%
UFGT
86
2.94%
UGT
86
2.94%
7DLGT
82
2.8%
F3H
82
2.8%
STR
66
2.25%
BR6OX2/CYP85A2
61
2.08%
SMT1/SMT2/SMT3
53
1.81%
DWF4/CYP90B1
52
1.78%
CYP71
47
1.61%
SGD
44
1.5%
CODM/T6ODM
44
1.5%
CSE
44
1.5%
F3'H/CYP75B
42
1.43%
IFR
41
1.4%
H6H
39
1.33%
PYKS
36
1.23%
LAC
36
1.23%
CAD
35
1.2%
TRI/TRII
30
1.02%
TAT
28
0.96%
T16H
27
0.92%
HCT
27
0.92%
BBE
25
0.85%
PAL
24
0.82%
RAS
24
0.82%
BR6OX1/CYP85A1
24
0.82%
ANR
22
0.75%
COMT
21
0.72%
CAS
21
0.72%
IO
20
0.68%
LAMT
19
0.65%
SLS
19
0.65%
FNS
19
0.65%
CCR
19
0.65%
GS
18
0.61%
8HGO
17
0.58%
F5H/CYP84A
17
0.58%
CYP90D1
17
0.58%
16OMT
16
0.55%
G8O/G8H
16
0.55%
GGPPS
13
0.44%
CYP51G1
12
0.41%
CPD/CYP90A1
12
0.41%
PMT
11
0.38%
NCS
11
0.38%
COR
10
0.34%
CNMT
10
0.34%
ANS/LDOX
10
0.34%
CPR
10
0.34%
GES
9
0.31%
7DLH
9
0.31%
F3'5'H/CYP75A
9
0.31%
DFR
8
0.27%
ROT3/CYP90C1
8
0.27%
FPPS
8
0.27%
TPS
8
0.27%
MPO
7
0.24%
CCoAOMT
7
0.24%
DET2
7
0.24%
AACT
7
0.24%
CYP80B1
6
0.2%
SQS/FDFT1
6
0.2%
SMO1/SMO2
6
0.2%
MVD
6
0.2%
CYP719
5
0.17%
CHS
5
0.17%
DWF1
5
0.17%
SQE
5
0.17%
MCT/IspD
5
0.17%
ISY
4
0.14%
CHI
4
0.14%
IDI
4
0.14%
MVK
4
0.14%
CMK/IspE
4
0.14%
ADC
3
0.1%
CYP80F1
3
0.1%
DWF7
3
0.1%
DWF5
3
0.1%
DXS
3
0.1%
TDC
2
0.07%
HPPR
2
0.07%
PMK
2
0.07%
HDR/IspH
2
0.07%
HMGR
2
0.07%
HMGS
2
0.07%
ODC
1
0.03%
XMT_MXMT_DXMT
1
0.03%
TYDC_DDC
1
0.03%
HYD1
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
DXR
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 328 | 19 | BAHD (152) | View species results |
| Phenylpropanoid pathway | 292 | 11 | POD (139) | View species results |
| Alkaloid pathway | 245 | 17 | NMT (48) | View species results |
| Flavonoid pathway | 125 | 7 | UFGT (79) | View species results |
| Rosmarinic acid pathway | 107 | 7 | C4H (39) | View species results |
| Steroid pathway | 76 | 11 | SMT1/SMT2/SMT3 (31) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1041 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 245 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| pugionium_dolabratum_Pdo03756.t1 | Alkaloid | IO | medium | pass | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo04012.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo04581.t1 | Alkaloid | IO | medium | pass | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo05001.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo06164.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo06602.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo10435.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo13026.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo13743.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo15014.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo15546.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo16569.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo17012.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo19691.t1 | Alkaloid | IO | medium | pass | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo20108.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo22912.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo24143.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo28115.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo28759.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |
| pugionium_dolabratum_Pdo30793.t1 | Alkaloid | IO | medium | borderline | IO__00001__sp_W8JIS5_IO_CATRO |