PlantSME Plant secondary metabolism enzyme database

Rhoiptelea chiliantha (rhoiptelea_chiliantha)

Imported from atlas release summary for Rhoiptelea chiliantha.

1574
Candidate Protein Records
1297
Pathway-Level Records
2905
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.37% Phenylpropanoid pathway 23.59% Alkaloid pathway 19.97% Flavonoid pathway 14.11% Rosmarinic acid pathway 8.33% Steroid pathway 5.63%
Family Distribution
BAHD 6.61% 4CL 5.99% POD 5.34% C4H 5.27% C3'H/CYP98A 4.34% UGT 3.92% 7DLGT 3.51% UFGT 3.34%
Other Families 61.69%
More Families (96)
F3H 94 3.24% NMT 92 3.17% IFS 90 3.1% CYP76 78 2.69% T3O 64 2.2% CODM/T6ODM 57 1.96% STR 48 1.65% LAC 48 1.65% CAD 46 1.58% DWF4/CYP90B1 46 1.58% BR6OX2/CYP85A2 44 1.51% SMT1/SMT2/SMT3 43 1.48% IFR 42 1.45% H6H 41 1.41% TRI/TRII 38 1.31% GS 35 1.2% F3'H/CYP75B 34 1.17% HCT 31 1.07% PAL 30 1.03% CAS 30 1.03% CYP71 28 0.96% FNS 25 0.86% RAS 25 0.86% TAT 25 0.86% CYP90D1 25 0.86% SLS 24 0.83% CSE 23 0.79% PMT 22 0.76% 7DLH 21 0.72% COMT 21 0.72% PYKS 20 0.69% G8O/G8H 19 0.65% CCR 19 0.65% SGD 18 0.62% BR6OX1/CYP85A1 18 0.62% NCS 16 0.55% IO 16 0.55% T16H 15 0.52% ANR 15 0.52% F5H/CYP84A 15 0.52% 8HGO 14 0.48% COR 14 0.48% TPS 14 0.48% 16OMT 13 0.45% GES 13 0.45% BBE 12 0.41% GGPPS 12 0.41% FPPS 12 0.41% DFR 11 0.38% CHS 11 0.38% F3'5'H/CYP75A 11 0.38% AACT 11 0.38% CNMT 10 0.34% CPR 9 0.31% SQS/FDFT1 9 0.31% ROT3/CYP90C1 9 0.31% LAMT 8 0.28% HPPR 8 0.28% SQE 8 0.28% CPD/CYP90A1 8 0.28% DXS 8 0.28% MPO 7 0.24% ISY 7 0.24% CYP80B1 7 0.24% ANS/LDOX 7 0.24% MVD 7 0.24% MCT/IspD 6 0.21% CYP719 5 0.17% CHI 5 0.17% DET2 5 0.17% CYP51G1 5 0.17% SMO1/SMO2 5 0.17% HDS/IspG 5 0.17% MVK 5 0.17% HMGR 5 0.17% TDC 4 0.14% HDR/IspH 4 0.14% TYDC_DDC 3 0.1% ODC 3 0.1% HYD1 3 0.1% PMK 3 0.1% HMGS 3 0.1% ADC 2 0.07% DWF5 2 0.07% DWF7 2 0.07% DWF1 2 0.07% FK 2 0.07% IDI 2 0.07% DXR 2 0.07% MDS/IspF 2 0.07% 6OMT_4OMT_SOMT 1 0.03% XMT_MXMT_DXMT 1 0.03% FLS 1 0.03% CCoAOMT 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 368 20 BAHD (154) View species results
Phenylpropanoid pathway 306 11 POD (142) View species results
Alkaloid pathway 259 22 NMT (47) View species results
Flavonoid pathway 183 11 UFGT (90) View species results
Rosmarinic acid pathway 108 7 4CL (37) View species results
Steroid pathway 73 11 CAS (26) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 861 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 248 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status Best Target
rhoiptelea_chiliantha.genome_RCH_Chr16G09260.1 Alkaloid 7DLGT low borderline 7DLGT__00001__sp_U3U992_UGT8_CATRO
rhoiptelea_chiliantha.genome_RCH_Chr16G09270.1 Alkaloid 7DLGT low borderline 7DLGT__00001__sp_U3U992_UGT8_CATRO