PlantSME Plant secondary metabolism enzyme database

Robinia pseudoacacia (robinia_pseudoacacia)

Imported from atlas release summary for Robinia pseudoacacia.

2141
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.01% Alkaloid pathway 22.19% Phenylpropanoid pathway 20.83% Flavonoid pathway 14.81% Rosmarinic acid pathway 8.41% Steroid pathway 4.76%
Family Distribution
C4H 6.16% C3'H/CYP98A 5.85% UGT 5.32% BAHD 4.92% 7DLGT 4.59% UFGT 4.42% CYP76 4.1% IFS 3.87%
Other Families 60.76%
More Families (97)
POD 192 3.66% T3O 191 3.64% 4CL 171 3.26% F3H 169 3.22% NMT 121 2.31% CODM/T6ODM 118 2.25% DWF4/CYP90B1 114 2.17% F3'H/CYP75B 102 1.94% BR6OX2/CYP85A2 90 1.72% COMT 86 1.64% STR 85 1.62% H6H 70 1.33% TRI/TRII 69 1.32% CAD 66 1.26% 16OMT 60 1.14% HCT 60 1.14% SMT1/SMT2/SMT3 58 1.11% CYP71 57 1.09% G8O/G8H 53 1.01% IFR 53 1.01% CAS 52 0.99% LAC 51 0.97% CYP90D1 49 0.93% CSE 48 0.92% RAS 45 0.86% PYKS 42 0.8% PMT 39 0.74% SGD 39 0.74% BBE 38 0.72% GES 38 0.72% TPS 37 0.71% ANR 34 0.65% T16H 31 0.59% GS 31 0.59% IO 25 0.48% COR 25 0.48% F3'5'H/CYP75A 25 0.48% PAL 24 0.46% CPD/CYP90A1 24 0.46% SLS 23 0.44% 7DLH 22 0.42% CCR 22 0.42% TAT 22 0.42% CYP51G1 22 0.42% 8HGO 21 0.4% F5H/CYP84A 21 0.4% FNS 20 0.38% MPO 19 0.36% BR6OX1/CYP85A1 19 0.36% LAMT 17 0.32% ANS/LDOX 17 0.32% ROT3/CYP90C1 13 0.25% NCS 12 0.23% CHS 12 0.23% DWF1 12 0.23% CNMT 11 0.21% TDC 11 0.21% CCoAOMT 11 0.21% SQS/FDFT1 11 0.21% AACT 11 0.21% TYDC_DDC 9 0.17% DFR 9 0.17% CPR 9 0.17% GGPPS 9 0.17% CHI 8 0.15% HPPR 8 0.15% SQE 8 0.15% HMGS 8 0.15% ISY 7 0.13% DXS 7 0.13% FPPS 6 0.11% CYP80B1 5 0.1% CYP719 5 0.1% SMO1/SMO2 5 0.1% ODC 4 0.08% DET2 4 0.08% HMGR 4 0.08% MVK 4 0.08% MVD 4 0.08% CYP80F1 3 0.06% 6OMT_4OMT_SOMT 3 0.06% FLS 3 0.06% HYD1 3 0.06% DWF7 3 0.06% ADC 2 0.04% MDS/IspF 2 0.04% MCT/IspD 2 0.04% DXR 2 0.04% HDR/IspH 2 0.04% XMT_MXMT_DXMT 1 0.02% DWF5 1 0.02% FK 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% IDI 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 621 19 UGT (261) View species results
Alkaloid pathway 475 20 7DLGT (122) View species results
Phenylpropanoid pathway 446 11 POD (177) View species results
Flavonoid pathway 317 10 UFGT (216) View species results
Rosmarinic acid pathway 180 7 C4H (79) View species results
Steroid pathway 102 11 CAS (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1942 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 363 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
robinia_pseudoacacia_CHAGGene04249 Flavonoid CHS low borderline CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
robinia_pseudoacacia_CHAGGene11496 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
robinia_pseudoacacia_CHAGGene14311 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
robinia_pseudoacacia_CHAGGene16958 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
robinia_pseudoacacia_CHAGGene16959 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
robinia_pseudoacacia_CHAGGene16960 Flavonoid CHS low borderline CHS__00006__sp_P30074_CHS2_MEDSA
robinia_pseudoacacia_CHAGGene17598 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
robinia_pseudoacacia_CHAGGene20484 Flavonoid CHS low borderline CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
robinia_pseudoacacia_CHAGGene25274 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
robinia_pseudoacacia_CHAGGene29051 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
robinia_pseudoacacia_CHAGGene29052 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
robinia_pseudoacacia_CHAGGene32459 Flavonoid CHS medium pass CHS__00004__sp_C6KI62_CHSL1_CANSA