PlantSME Plant secondary metabolism enzyme database

Roridula gorgonias (roridula_gorgonias)

Imported from atlas release summary for Roridula gorgonias.

954
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.56% Phenylpropanoid pathway 22.85% Alkaloid pathway 22.64% Flavonoid pathway 9.54% Rosmarinic acid pathway 8.18% Steroid pathway 7.23%
Family Distribution
C4H 6.56% BAHD 6.24% C3'H/CYP98A 5.06% 4CL 4.74% POD 3.89% UGT 3.65% F3H 3.6% IFS 3.36%
Other Families 62.9%
More Families (96)
NMT 71 2.88% CYP76 63 2.55% STR 58 2.35% 7DLGT 56 2.27% H6H 53 2.15% T3O 51 2.07% DWF4/CYP90B1 44 1.78% CODM/T6ODM 43 1.74% UFGT 42 1.7% F3'H/CYP75B 41 1.66% CAD 41 1.66% TRI/TRII 37 1.5% G8O/G8H 37 1.5% LAC 36 1.46% SMT1/SMT2/SMT3 36 1.46% GS 30 1.22% FNS 30 1.22% CSE 30 1.22% CAS 30 1.22% IFR 29 1.17% BR6OX2/CYP85A2 28 1.13% 7DLH 27 1.09% CYP71 27 1.09% TAT 25 1.01% PYKS 24 0.97% HCT 24 0.97% SGD 23 0.93% SLS 22 0.89% T16H 22 0.89% RAS 21 0.85% CPD/CYP90A1 19 0.77% PAL 18 0.73% F3'5'H/CYP75A 18 0.73% BBE 17 0.69% COMT 17 0.69% ANR 16 0.65% PMT 15 0.61% TPS 15 0.61% GES 14 0.57% ANS/LDOX 13 0.53% F5H/CYP84A 13 0.53% CYP90D1 13 0.53% NCS 12 0.49% IO 12 0.49% DFR 12 0.49% CCR 12 0.49% BR6OX1/CYP85A1 12 0.49% 8HGO 11 0.45% ROT3/CYP90C1 10 0.41% AACT 9 0.36% COR 8 0.32% 16OMT 8 0.32% CNMT 8 0.32% CHS 8 0.32% CYP80B1 7 0.28% CYP719 7 0.28% HPPR 7 0.28% CYP51G1 7 0.28% SQS/FDFT1 7 0.28% GGPPS 7 0.28% ISY 6 0.24% DET2 6 0.24% MVK 6 0.24% LAMT 5 0.2% MPO 5 0.2% CHI 5 0.2% CPR 5 0.2% DXS 5 0.2% FPPS 5 0.2% XMT_MXMT_DXMT 4 0.16% SMO1/SMO2 4 0.16% TDC 3 0.12% CCoAOMT 3 0.12% DWF7 3 0.12% SQE 3 0.12% PMK 3 0.12% HMGR 3 0.12% ODC 2 0.08% TYDC_DDC 2 0.08% DXR 2 0.08% CMK/IspE 2 0.08% MVD 2 0.08% HMGS 2 0.08% MCT/IspD 2 0.08% 6OMT_4OMT_SOMT 1 0.04% ADC 1 0.04% FLS 1 0.04% CPI1 1 0.04% DWF5 1 0.04% FK 1 0.04% HYD1 1 0.04% DWF1 1 0.04% MDS/IspF 1 0.04% HDR/IspH 1 0.04% IDI 1 0.04% HDS/IspG 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 282 20 BAHD (126) View species results
Phenylpropanoid pathway 218 13 POD (83) View species results
Alkaloid pathway 216 22 NMT (40) View species results
Flavonoid pathway 91 11 UFGT (28) View species results
Rosmarinic acid pathway 78 7 4CL (27) View species results
Steroid pathway 69 14 CAS (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 850 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 199 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Rgor810630211100.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rgor810630211110.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Rgor811780215780.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rgor812190217460.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rgor812350217890.1 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Rgor835740221370.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rgor854460223310.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Rgor854470223320.1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR