PlantSME Plant secondary metabolism enzyme database

Salix arbutifolia (salix_arbutifolia)

Imported from atlas release summary for Salix arbutifolia.

1503
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.94% Phenylpropanoid pathway 21.82% Alkaloid pathway 21.69% Flavonoid pathway 11.11% Rosmarinic acid pathway 10.25% Steroid pathway 6.19%
Family Distribution
C4H 6.1% C3'H/CYP98A 6.03% BAHD 5.87% 4CL 4.42% CYP76 4.22% IFS 3.72% POD 3.7% UGT 3.44%
Other Families 62.49%
More Families (96)
T3O 118 3.05% F3H 112 2.9% 7DLGT 107 2.77% NMT 100 2.59% UFGT 96 2.48% DWF4/CYP90B1 87 2.25% F3'H/CYP75B 73 1.89% BR6OX2/CYP85A2 71 1.84% STR 70 1.81% CAD 66 1.71% H6H 63 1.63% CODM/T6ODM 57 1.47% TRI/TRII 56 1.45% LAC 52 1.35% TPS 48 1.24% GES 47 1.22% SMT1/SMT2/SMT3 47 1.22% BBE 46 1.19% IO 44 1.14% CAS 44 1.14% GS 43 1.11% HCT 42 1.09% CYP71 42 1.09% CYP90D1 40 1.03% CCR 39 1.01% IFR 37 0.96% TAT 36 0.93% RAS 35 0.91% PYKS 33 0.85% SGD 32 0.83% CSE 32 0.83% F3'5'H/CYP75A 28 0.72% ANR 27 0.7% T16H 26 0.67% G8O/G8H 25 0.65% DFR 23 0.59% PMT 22 0.57% 7DLH 22 0.57% NCS 21 0.54% CPD/CYP90A1 21 0.54% SLS 19 0.49% CYP51G1 18 0.47% COMT 17 0.44% F5H/CYP84A 16 0.41% LAMT 15 0.39% PAL 15 0.39% FNS 14 0.36% ISY 12 0.31% 8HGO 12 0.31% CPR 12 0.31% BR6OX1/CYP85A1 12 0.31% CNMT 11 0.28% COR 10 0.26% ANS/LDOX 10 0.26% AACT 10 0.26% HPPR 9 0.23% SQE 9 0.23% GGPPS 9 0.23% 16OMT 8 0.21% MPO 8 0.21% CHS 8 0.21% SQS/FDFT1 8 0.21% DET2 8 0.21% HMGR 8 0.21% MVD 8 0.21% TDC 7 0.18% TYDC_DDC 7 0.18% FPPS 7 0.18% CYP719 6 0.16% ROT3/CYP90C1 6 0.16% CHI 5 0.13% CCoAOMT 5 0.13% SMO1/SMO2 5 0.13% DXS 4 0.1% MVK 4 0.1% HMGS 4 0.1% 6OMT_4OMT_SOMT 3 0.08% CYP80B1 3 0.08% DWF1 3 0.08% CMK/IspE 3 0.08% IDI 3 0.08% MCT/IspD 3 0.08% XMT_MXMT_DXMT 2 0.05% FLS 2 0.05% DWF7 2 0.05% HYD1 2 0.05% DWF5 2 0.05% HDS/IspG 2 0.05% DXR 2 0.05% MDS/IspF 2 0.05% ODC 1 0.03% ADC 1 0.03% FK 1 0.03% CPI1 1 0.03% PMK 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 435 19 BAHD (169) View species results
Phenylpropanoid pathway 328 11 POD (132) View species results
Alkaloid pathway 326 18 NMT (51) View species results
Flavonoid pathway 167 8 UFGT (83) View species results
Rosmarinic acid pathway 154 7 C4H (54) View species results
Steroid pathway 93 12 CAS (38) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 304 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
salix_arbutifolia_GWHPBDOB000940 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB001057 Rosmarinic Acid CPR low borderline
salix_arbutifolia_GWHPBDOB002909 Rosmarinic Acid CPR low borderline
salix_arbutifolia_GWHPBDOB003780 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB004252 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB008472 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB010213 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB012530 Rosmarinic Acid CPR low borderline
salix_arbutifolia_GWHPBDOB013803 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB013804 Rosmarinic Acid CPR low borderline
salix_arbutifolia_GWHPBDOB018403 Rosmarinic Acid CPR medium pass
salix_arbutifolia_GWHPBDOB028539 Rosmarinic Acid CPR low borderline