PlantSME Plant secondary metabolism enzyme database

Salvia rosmarinus (salvia_rosmarinus)

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Imported from atlas release summary for Salvia rosmarinus.

2927
Candidate Protein Records
2301
Pathway-Level Records
5897
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 32.42% Phenylpropanoid pathway 19.77% Alkaloid pathway 19.12% Flavonoid pathway 11.99% Rosmarinic acid pathway 10.52% Steroid pathway 6.17%
Family Distribution
C4H 6.75% BAHD 6.38% C3'H/CYP98A 5.92% 4CL 4.53% IFS 4.15% CYP76 3.95% UGT 3.9% T3O 3.88%
Other Families 60.54%
More Families (97)
POD 205 3.48% 7DLGT 198 3.36% NMT 188 3.19% UFGT 188 3.19% DWF4/CYP90B1 159 2.7% F3H 131 2.22% F3'H/CYP75B 129 2.19% STR 112 1.9% BR6OX2/CYP85A2 111 1.88% CODM/T6ODM 87 1.48% CYP71 86 1.46% SMT1/SMT2/SMT3 75 1.27% LAC 72 1.22% IFR 71 1.2% CAD 66 1.12% TPS 62 1.05% T16H 59 1.0% GES 57 0.97% CAS 57 0.97% GS 52 0.88% H6H 50 0.85% G8O/G8H 49 0.83% PYKS 49 0.83% HCT 49 0.83% TRI/TRII 45 0.76% BBE 45 0.76% RAS 45 0.76% CSE 43 0.73% TAT 43 0.73% 7DLH 42 0.71% CYP51G1 37 0.63% CYP90D1 36 0.61% PMT 35 0.59% SLS 34 0.58% FNS 33 0.56% ANR 33 0.56% IO 30 0.51% CCR 30 0.51% F5H/CYP84A 29 0.49% COMT 29 0.49% 8HGO 28 0.47% BR6OX1/CYP85A1 28 0.47% NCS 27 0.46% CPD/CYP90A1 25 0.42% FPPS 23 0.39% 16OMT 22 0.37% LAMT 22 0.37% F3'5'H/CYP75A 21 0.36% CNMT 19 0.32% GGPPS 19 0.32% ANS/LDOX 17 0.29% HMGR 16 0.27% SGD 15 0.25% CHS 15 0.25% PAL 15 0.25% CCoAOMT 15 0.25% DXS 15 0.25% PMK 15 0.25% TYDC_DDC 14 0.24% CPR 14 0.24% HPPR 13 0.22% ROT3/CYP90C1 13 0.22% AACT 13 0.22% SQS/FDFT1 12 0.2% COR 11 0.19% MPO 11 0.19% DFR 11 0.19% MVD 11 0.19% CYP80B1 10 0.17% DET2 9 0.15% SMO1/SMO2 9 0.15% SQE 9 0.15% FLS 8 0.14% ISY 7 0.12% MCT/IspD 7 0.12% 6OMT_4OMT_SOMT 6 0.1% CYP719 6 0.1% ADC 5 0.08% CHI 5 0.08% FK 5 0.08% MVK 5 0.08% HDS/IspG 5 0.08% HDR/IspH 5 0.08% CYP80F1 4 0.07% DWF1 4 0.07% HMGS 4 0.07% IDI 4 0.07% CPI1 3 0.05% DWF5 3 0.05% CMK/IspE 3 0.05% TDC 2 0.03% DWF7 2 0.03% HYD1 2 0.03% DXR 2 0.03% GPPS 2 0.03% MDS/IspF 2 0.03% XMT_MXMT_DXMT 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 746 19 BAHD (296) View species results
Phenylpropanoid pathway 455 11 POD (189) View species results
Alkaloid pathway 440 21 NMT (98) View species results
Flavonoid pathway 276 14 UFGT (172) View species results
Rosmarinic acid pathway 242 7 C4H (111) View species results
Steroid pathway 142 14 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2362 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 470 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
salvia_rosmarinus_587147.g3.t1 Rosmarinic Acid C4H low borderline
salvia_rosmarinus_587151.g2.t1 Rosmarinic Acid C4H low borderline
salvia_rosmarinus_587167.g2.t1 Rosmarinic Acid C4H low borderline
salvia_rosmarinus_811.g112.t1 Rosmarinic Acid C4H medium pass
salvia_rosmarinus_811.g113.t1_811.g114.t1 Rosmarinic Acid C4H medium pass
salvia_rosmarinus_811.g125.t1 Rosmarinic Acid C4H medium pass
salvia_rosmarinus_811.g127.t1 Rosmarinic Acid C4H medium pass
salvia_rosmarinus_811.g419.t1 Rosmarinic Acid C4H low borderline
salvia_rosmarinus_811.g82.t1_811.g83.t1 Rosmarinic Acid C4H medium pass
salvia_rosmarinus_830.g133.t1 Rosmarinic Acid C4H low borderline
salvia_rosmarinus_830.g523.t1 Rosmarinic Acid C4H low borderline