Salvia rosmarinus (salvia_rosmarinus)
/
Imported from atlas release summary for Salvia rosmarinus.
2301
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2301
Candidate Genes
C4H
6.75%
BAHD
6.38%
C3'H/CYP98A
5.92%
4CL
4.53%
IFS
4.15%
CYP76
3.95%
UGT
3.9%
T3O
3.88%
Other Families
60.54%
More Families (97)
POD
205
3.48%
7DLGT
198
3.36%
NMT
188
3.19%
UFGT
188
3.19%
DWF4/CYP90B1
159
2.7%
F3H
131
2.22%
F3'H/CYP75B
129
2.19%
STR
112
1.9%
BR6OX2/CYP85A2
111
1.88%
CODM/T6ODM
87
1.48%
CYP71
86
1.46%
SMT1/SMT2/SMT3
75
1.27%
LAC
72
1.22%
IFR
71
1.2%
CAD
66
1.12%
TPS
62
1.05%
T16H
59
1.0%
GES
57
0.97%
CAS
57
0.97%
GS
52
0.88%
H6H
50
0.85%
G8O/G8H
49
0.83%
PYKS
49
0.83%
HCT
49
0.83%
TRI/TRII
45
0.76%
BBE
45
0.76%
RAS
45
0.76%
CSE
43
0.73%
TAT
43
0.73%
7DLH
42
0.71%
CYP51G1
37
0.63%
CYP90D1
36
0.61%
PMT
35
0.59%
SLS
34
0.58%
FNS
33
0.56%
ANR
33
0.56%
IO
30
0.51%
CCR
30
0.51%
F5H/CYP84A
29
0.49%
COMT
29
0.49%
8HGO
28
0.47%
BR6OX1/CYP85A1
28
0.47%
NCS
27
0.46%
CPD/CYP90A1
25
0.42%
FPPS
23
0.39%
16OMT
22
0.37%
LAMT
22
0.37%
F3'5'H/CYP75A
21
0.36%
CNMT
19
0.32%
GGPPS
19
0.32%
ANS/LDOX
17
0.29%
HMGR
16
0.27%
SGD
15
0.25%
CHS
15
0.25%
PAL
15
0.25%
CCoAOMT
15
0.25%
DXS
15
0.25%
PMK
15
0.25%
TYDC_DDC
14
0.24%
CPR
14
0.24%
HPPR
13
0.22%
ROT3/CYP90C1
13
0.22%
AACT
13
0.22%
SQS/FDFT1
12
0.2%
COR
11
0.19%
MPO
11
0.19%
DFR
11
0.19%
MVD
11
0.19%
CYP80B1
10
0.17%
DET2
9
0.15%
SMO1/SMO2
9
0.15%
SQE
9
0.15%
FLS
8
0.14%
ISY
7
0.12%
MCT/IspD
7
0.12%
6OMT_4OMT_SOMT
6
0.1%
CYP719
6
0.1%
ADC
5
0.08%
CHI
5
0.08%
FK
5
0.08%
MVK
5
0.08%
HDS/IspG
5
0.08%
HDR/IspH
5
0.08%
CYP80F1
4
0.07%
DWF1
4
0.07%
HMGS
4
0.07%
IDI
4
0.07%
CPI1
3
0.05%
DWF5
3
0.05%
CMK/IspE
3
0.05%
TDC
2
0.03%
DWF7
2
0.03%
HYD1
2
0.03%
DXR
2
0.03%
GPPS
2
0.03%
MDS/IspF
2
0.03%
XMT_MXMT_DXMT
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 746 | 19 | BAHD (296) | View species results |
| Phenylpropanoid pathway | 455 | 11 | POD (189) | View species results |
| Alkaloid pathway | 440 | 21 | NMT (98) | View species results |
| Flavonoid pathway | 276 | 14 | UFGT (172) | View species results |
| Rosmarinic acid pathway | 242 | 7 | C4H (111) | View species results |
| Steroid pathway | 142 | 14 | SMT1/SMT2/SMT3 (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2362 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 470 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| salvia_rosmarinus_265040.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_265040.g2.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_2676.g13.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_2684.g26.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_2700.g15.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_2727.g48.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_2743.g338.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_2760.g13.t1 | Alkaloid | 7DLGT | high | pass |
| salvia_rosmarinus_2760.g28.t1 | Alkaloid | 7DLGT | high | pass |
| salvia_rosmarinus_2760.g29.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_2760.g41.t1 | Alkaloid | 7DLGT | high | pass |
| salvia_rosmarinus_2808.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_295193.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_312901.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_317108.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_317110.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_329076.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_332084.g1.t1 | Alkaloid | 7DLGT | high | pass |
| salvia_rosmarinus_333024.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_341130.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_341710.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_345563.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_345563.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_347733.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_348342.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_349505.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_351260.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_354383.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_354397.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_363777.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_363896.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_363896.g4.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_366765.g3.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_366798.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_367235.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_367235.g3.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_372133.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_373223.g1.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_373223.g2.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_374033.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_377813.g2.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_377813.g3.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_382340.g3.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_382340.g4.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_383102.g2.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_383365.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_383922.g14.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_384961.g3.t1 | Alkaloid | 7DLGT | medium | pass |
| salvia_rosmarinus_385700.g1.t1 | Alkaloid | 7DLGT | low | borderline |
| salvia_rosmarinus_385931.g1.t1 | Alkaloid | 7DLGT | medium | pass |