PlantSME Plant secondary metabolism enzyme database

Salvinia cucullata (salvinia_cucullata)

Imported from atlas release summary for Salvinia cucullata.

508
Candidate Genes
100
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Current group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Lycophytes/Ferns
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.54% Phenylpropanoid pathway 24.02% Alkaloid pathway 23.62% Flavonoid pathway 11.22% Rosmarinic acid pathway 7.87% Steroid pathway 4.72%
Family Distribution
BAHD 7.19% POD 5.08% C4H 5.0% C3'H/CYP98A 4.93% 4CL 4.69% NMT 3.91% STR 3.75% CYP76 3.05%
Other Families 62.39%
More Families (92)
UGT 39 3.05% 7DLGT 33 2.58% PYKS 29 2.27% UFGT 29 2.27% IFR 28 2.19% TRI/TRII 27 2.11% DWF4/CYP90B1 26 2.03% F3'H/CYP75B 25 1.95% T3O 22 1.72% IFS 22 1.72% CYP71 22 1.72% GS 21 1.64% CSE 21 1.64% F3H 20 1.56% BR6OX2/CYP85A2 20 1.56% PAL 18 1.41% CAD 17 1.33% RAS 15 1.17% SGD 13 1.02% SMT1/SMT2/SMT3 13 1.02% SLS 12 0.94% FNS 12 0.94% CYP90D1 12 0.94% G8O/G8H 11 0.86% T16H 11 0.86% 8HGO 10 0.78% CODM/T6ODM 10 0.78% H6H 10 0.78% HCT 10 0.78% LAC 10 0.78% IO 9 0.7% F3'5'H/CYP75A 9 0.7% CNMT 8 0.63% CHS 8 0.63% ANR 8 0.63% COMT 8 0.63% CCR 8 0.63% CPD/CYP90A1 8 0.63% PMT 7 0.55% AACT 7 0.55% GGPPS 7 0.55% LAMT 6 0.47% 7DLH 6 0.47% CPR 6 0.47% CAS 6 0.47% COR 5 0.39% CHI 5 0.39% F5H/CYP84A 5 0.39% MVK 5 0.39% NCS 4 0.31% MPO 4 0.31% DFR 4 0.31% TAT 4 0.31% CYP51G1 4 0.31% DET2 4 0.31% HDS/IspG 4 0.31% FPPS 4 0.31% HMGR 4 0.31% TDC 3 0.23% BBE 3 0.23% ADC 3 0.23% SMO1/SMO2 3 0.23% SQS/FDFT1 3 0.23% BR6OX1/CYP85A1 3 0.23% MCT/IspD 3 0.23% MVD 3 0.23% DXS 3 0.23% TYDC_DDC 2 0.16% CYP80B1 2 0.16% ISY 2 0.16% CCoAOMT 2 0.16% DWF1 2 0.16% FK 2 0.16% DWF7 2 0.16% HMGS 2 0.16% CMK/IspE 2 0.16% TPS 2 0.16% IDI 2 0.16% 16OMT 1 0.08% CYP719 1 0.08% 6OMT_4OMT_SOMT 1 0.08% XMT_MXMT_DXMT 1 0.08% ANS/LDOX 1 0.08% HPPR 1 0.08% SQE 1 0.08% ROT3/CYP90C1 1 0.08% HYD1 1 0.08% DWF5 1 0.08% MDS/IspF 1 0.08% DXR 1 0.08% PMK 1 0.08% HDR/IspH 1 0.08%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 145 18 BAHD (65) View species results
Phenylpropanoid pathway 122 9 POD (59) View species results
Alkaloid pathway 120 17 TRI/TRII (22) View species results
Flavonoid pathway 57 10 UFGT (27) View species results
Rosmarinic acid pathway 40 7 C4H (10) View species results
Steroid pathway 24 10 CAS (6) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 397 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 117 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
ScucSacu_v1.1_s00210053120 Alkaloid PMT medium pass
ScucSacu_v1.1_s00260062270 Alkaloid PMT medium pass
ScucSacu_v1.1_s00350075010 Alkaloid PMT medium borderline
ScucSacu_v1.1_s00540095520 Alkaloid PMT medium pass
ScucSacu_v1.1_s01250149600 Alkaloid PMT low borderline
ScucSacu_v1.1_s02130181050 Alkaloid PMT medium borderline
ScucSacu_v1.1_s02250183540 Alkaloid PMT low borderline