PlantSME Plant secondary metabolism enzyme database

Scalesia atractyloides (scalesia_atractyloides)

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Imported from atlas release summary for Scalesia atractyloides.

3288
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.54% Phenylpropanoid pathway 20.77% Alkaloid pathway 19.89% Flavonoid pathway 12.74% Rosmarinic acid pathway 9.18% Steroid pathway 5.87%
Family Distribution
C4H 7.2% C3'H/CYP98A 6.45% BAHD 5.21% CYP76 5.02% IFS 3.86% T3O 3.84% UGT 3.7% 4CL 3.49%
Other Families 61.23%
More Families (96)
7DLGT 282 3.31% UFGT 275 3.23% POD 267 3.14% DWF4/CYP90B1 226 2.65% F3'H/CYP75B 218 2.56% BR6OX2/CYP85A2 180 2.11% F3H 165 1.94% STR 151 1.77% CYP71 134 1.57% NMT 133 1.56% TPS 133 1.56% T16H 126 1.48% CAD 121 1.42% GES 114 1.34% CODM/T6ODM 110 1.29% CAS 109 1.28% CYP90D1 97 1.14% F5H/CYP84A 87 1.02% SMT1/SMT2/SMT3 85 1.0% HCT 83 0.97% H6H 81 0.95% G8O/G8H 80 0.94% LAC 80 0.94% TRI/TRII 77 0.9% FNS 76 0.89% CSE 76 0.89% RAS 76 0.89% IFR 75 0.88% COMT 74 0.87% IO 71 0.83% GS 61 0.72% PMT 60 0.7% F3'5'H/CYP75A 59 0.69% PAL 51 0.6% BBE 48 0.56% SGD 47 0.55% PYKS 47 0.55% CYP51G1 46 0.54% 16OMT 45 0.53% TAT 44 0.52% ANR 43 0.51% BR6OX1/CYP85A1 42 0.49% SLS 41 0.48% CPD/CYP90A1 36 0.42% ANS/LDOX 34 0.4% NCS 33 0.39% 7DLH 32 0.38% CYP80B1 31 0.36% 8HGO 31 0.36% CCoAOMT 31 0.36% CCR 29 0.34% CYP719 27 0.32% COR 26 0.31% HPPR 21 0.25% LAMT 20 0.23% CHS 20 0.23% CNMT 18 0.21% DFR 18 0.21% CPR 17 0.2% SQE 17 0.2% MPO 16 0.19% ROT3/CYP90C1 15 0.18% FPPS 15 0.18% XMT_MXMT_DXMT 14 0.16% SMO1/SMO2 14 0.16% CHI 13 0.15% ISY 12 0.14% HMGR 12 0.14% AACT 11 0.13% DXS 11 0.13% SQS/FDFT1 10 0.12% GGPPS 10 0.12% DXR 9 0.11% TYDC_DDC 8 0.09% DET2 8 0.09% HDR/IspH 8 0.09% HDS/IspG 8 0.09% TDC 7 0.08% MVD 7 0.08% 6OMT_4OMT_SOMT 6 0.07% MVK 6 0.07% IDI 6 0.07% CMK/IspE 6 0.07% DWF7 5 0.06% HYD1 5 0.06% MCT/IspD 5 0.06% FLS 4 0.05% DWF5 4 0.05% DWF1 4 0.05% HMGS 4 0.05% PMK 3 0.04% CYP80F1 2 0.02% ADC 2 0.02% FK 2 0.02% CPI1 2 0.02% MDS/IspF 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1037 20 BAHD (354) View species results
Phenylpropanoid pathway 683 12 POD (234) View species results
Alkaloid pathway 654 25 7DLGT (144) View species results
Flavonoid pathway 419 13 UFGT (246) View species results
Rosmarinic acid pathway 302 7 C4H (116) View species results
Steroid pathway 193 12 CAS (79) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3795 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 603 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF7
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Gene Pathway Family Confidence Status Best Target
scalesia_atractyloides_augustus_masked-chr_10-processed-gene-374.1-mRNA-1 Steroid DWF7 low borderline DWF7__00001__sp_Q39208_SC5D1_ARATH
scalesia_atractyloides_augustus_masked-chr_16-processed-gene-600.5-mRNA-1 Steroid DWF7 medium pass DWF7__00001__sp_Q39208_SC5D1_ARATH
scalesia_atractyloides_maker-chr_3-snap-gene-778.16-mRNA-1 Steroid DWF7 medium pass DWF7__00001__sp_Q39208_SC5D1_ARATH
scalesia_atractyloides_maker-chr_31-augustus-gene-251.13-mRNA-1 Steroid DWF7 medium pass DWF7__00001__sp_Q39208_SC5D1_ARATH
scalesia_atractyloides_maker-chr_34-snap-gene-309.5-mRNA-1 Steroid DWF7 medium pass DWF7__00001__sp_Q39208_SC5D1_ARATH