PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

716
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.44% Terpenoid pathway 23.74% Alkaloid pathway 22.77% Flavonoid pathway 11.31% Rosmarinic acid pathway 10.89% Steroid pathway 6.84%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.04% 4CL 5.06% CYP76 4.82% BAHD 4.54% NMT 3.61% STR 3.37% IFS 3.33%
Other Families 62.01%
More Families (97)
POD 69 3.23% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 58 2.72% H6H 45 2.11% GS 41 1.92% IFR 40 1.87% F3'H/CYP75B 36 1.69% TRI/TRII 35 1.64% DWF4/CYP90B1 35 1.64% UGT 34 1.59% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.26% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 24 1.12% CODM/T6ODM 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% F3'5'H/CYP75A 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% GES 8 0.37% CYP719 8 0.37% SLS 8 0.37% ANS/LDOX 8 0.37% DFR 8 0.37% CYP90D1 8 0.37% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
Snep2082910012780 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Snep2090013180 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Snep2099990013820 Terpenoid BAHD medium borderline BAHD__00044__sp_Q56WD9_THIK2_ARATH
Snep2102180013950 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Snep2170580015330 Terpenoid BAHD low borderline BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Snep2222140018260 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Snep2229740019060 Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Snep2257840020650 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Snep2261700020930 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Snep2305450027280 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Snep2315330029540 Terpenoid BAHD low borderline BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Snep2342540036600 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
Snep2347480038410 Terpenoid BAHD low borderline BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Snep2350190039440 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Snep2358330042710 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Snep2377230056000 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Snep2379330057840 Terpenoid BAHD medium pass BAHD__00051__sp_Q7XA86_ZDH11_ARATH
Snep2380560059190 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Snep2381200060080 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Snep2389750068790 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Snep2393130074000 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Snep2393600074460 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Snep2398590081800 Terpenoid BAHD medium pass BAHD__00079__sp_Q9LIE4_ZDHC8_ARATH
Snep2400900084910 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Snep2401930086660 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Snep2407380094780 Terpenoid BAHD medium pass BAHD__00021__sp_K7K424_DAT2D_SOYBN
Snep2409990098910 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Snep2410440099800 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Snep2420100118810 Terpenoid BAHD low borderline BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
Snep2424960129880 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Snep2425320130520 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Snep2428070137490 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Snep2429020140480 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Snep2429150141200 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Snep2429350141700 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
Snep2431880150470 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
Snep2432200150960 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Snep2437400166600 Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
Snep2438180168740 Terpenoid BAHD medium pass BAHD__00070__sp_Q9CAN8_MBOA2_ARATH
Snep2440610177770 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Snep2442310183910 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Snep2443220187070 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Snep2443460187810 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Snep2443480187890 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Snep2444230191040 Terpenoid BAHD low borderline BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Snep2444230191070 Terpenoid BAHD low borderline BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Snep2445140195130 Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
Snep2446060198880 Terpenoid BAHD medium pass BAHD__00014__sp_B9RK42_GPC1_RICCO
Snep2447790206080 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Snep2448780211110 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR