PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

716
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.44% Terpenoid pathway 23.74% Alkaloid pathway 22.77% Flavonoid pathway 11.31% Rosmarinic acid pathway 10.89% Steroid pathway 6.84%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.04% 4CL 5.06% CYP76 4.82% BAHD 4.54% NMT 3.61% STR 3.37% IFS 3.33%
Other Families 62.01%
More Families (97)
POD 69 3.23% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 58 2.72% H6H 45 2.11% GS 41 1.92% IFR 40 1.87% F3'H/CYP75B 36 1.69% TRI/TRII 35 1.64% DWF4/CYP90B1 35 1.64% UGT 34 1.59% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.26% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 24 1.12% CODM/T6ODM 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% F3'5'H/CYP75A 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% GES 8 0.37% CYP719 8 0.37% SLS 8 0.37% ANS/LDOX 8 0.37% DFR 8 0.37% CYP90D1 8 0.37% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status Best Target
Snep2261700020930 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2381200060080 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2393130074000 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2401930086660 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2409990098910 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2420100118810 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2428070137490 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2442310183910 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2451430222960 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2452520228700 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2452520228710 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2453490233930 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2454050236840 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2454050236850 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2454510238830 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2458040254940 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2465110297180 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2466330303730 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2468600314470 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2469600319690 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2472020331000 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Snep2473370338020 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2477870352980 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Snep2749330380690 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH
Snep2749340380710 Phenylpropanoid HCT medium pass HCT__00002__sp_Q9FI78_HST_ARATH