PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

716
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 24.44% Terpenoid pathway 23.74% Alkaloid pathway 22.77% Flavonoid pathway 11.31% Rosmarinic acid pathway 10.89% Steroid pathway 6.84%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.04% 4CL 5.06% CYP76 4.82% BAHD 4.54% NMT 3.61% STR 3.37% IFS 3.33%
Other Families 62.01%
More Families (97)
POD 69 3.23% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 58 2.72% H6H 45 2.11% GS 41 1.92% IFR 40 1.87% F3'H/CYP75B 36 1.69% TRI/TRII 35 1.64% DWF4/CYP90B1 35 1.64% UGT 34 1.59% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.26% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 24 1.12% CODM/T6ODM 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% F3'5'H/CYP75A 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% GES 8 0.37% CYP719 8 0.37% SLS 8 0.37% ANS/LDOX 8 0.37% DFR 8 0.37% CYP90D1 8 0.37% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Gene Pathway Family Confidence Status Best Target
Snep2469890321540 Phenylpropanoid POD low borderline POD__00021__sp_Q9LEH3_PER15_IPOBA
Snep2470910326540 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Snep2471220327400 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Snep2472620333680 Phenylpropanoid POD medium pass POD__00020__sp_Q9FE01_APX2_ORYSJ
Snep2472840334950 Phenylpropanoid POD medium pass POD__00011__sp_Q05431_APX1_ARATH
Snep2473760339560 Phenylpropanoid POD low borderline POD__00007__sp_P0C5C9_REHYA_ORYSJ
Snep2474230341200 Phenylpropanoid POD medium pass POD__00024__sp_Q9SCX8_PPA17_ARATH
Snep2477250350180 Phenylpropanoid POD medium pass POD__00019__sp_Q949Y3_PPA26_ARATH
Snep2477270350280 Phenylpropanoid POD medium pass POD__00003__sp_A9PCL4_PRX2_POPTR
Snep2477870352970 Phenylpropanoid POD medium pass POD__00020__sp_Q9FE01_APX2_ORYSJ
Snep2478750354950 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Snep2478820355270 Phenylpropanoid POD medium pass POD__00021__sp_Q9LEH3_PER15_IPOBA
Snep2483460366420 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Snep2556110373380 Phenylpropanoid POD low borderline POD__00022__sp_Q9LU86_PRXQ_ARATH
Snep2556140373400 Phenylpropanoid POD low borderline POD__00022__sp_Q9LU86_PRXQ_ARATH
Snep2784620382400 Phenylpropanoid POD low borderline POD__00018__sp_Q8H0V5_OCP3_ARATH
Snep2784650382420 Phenylpropanoid POD low borderline POD__00018__sp_Q8H0V5_OCP3_ARATH
Snep2948550388150 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC
Snep2948570388160 Phenylpropanoid POD medium pass POD__00027__sp_Q9XIV8_PERN1_TOBAC