PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

716
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Snep1574960000970 Rosmarinic Acid 4CL low borderline
Snep1586840001880 Rosmarinic Acid 4CL medium pass
Snep1592590002470 Rosmarinic Acid 4CL medium pass
Snep1904410006530 Rosmarinic Acid 4CL medium pass
Snep1936340009140 Rosmarinic Acid 4CL low borderline
Snep1997220009980 Rosmarinic Acid 4CL medium pass
Snep2036070010600 Rosmarinic Acid 4CL medium pass
Snep2081420012570 Rosmarinic Acid 4CL low borderline
Snep2100230013840 Rosmarinic Acid 4CL low borderline
Snep2264510021070 Rosmarinic Acid 4CL low borderline
Snep2278260023940 Rosmarinic Acid 4CL low borderline
Snep2333260033460 Rosmarinic Acid 4CL medium pass
Snep2351560039860 Rosmarinic Acid 4CL medium pass
Snep2385360063700 Rosmarinic Acid 4CL low borderline
Snep2396690079120 Rosmarinic Acid 4CL medium pass
Snep2411230101260 Rosmarinic Acid 4CL medium pass
Snep2413780105770 Rosmarinic Acid 4CL low borderline
Snep2423570126240 Rosmarinic Acid 4CL low borderline
Snep2436430162970 Rosmarinic Acid 4CL low borderline
Snep2440580177630 Rosmarinic Acid 4CL medium pass
Snep2447310203750 Rosmarinic Acid 4CL low borderline
Snep2450610218390 Rosmarinic Acid 4CL medium pass
Snep2453490233980 Rosmarinic Acid 4CL medium pass
Snep2457690252590 Rosmarinic Acid 4CL low borderline
Snep2458720258830 Rosmarinic Acid 4CL low borderline
Snep2461980276980 Rosmarinic Acid 4CL low borderline
Snep2462690280330 Rosmarinic Acid 4CL medium pass
Snep2464240291370 Rosmarinic Acid 4CL low borderline
Snep2464300291850 Rosmarinic Acid 4CL low borderline
Snep2464310291990 Rosmarinic Acid 4CL medium pass
Snep2474570341790 Rosmarinic Acid 4CL medium pass
Snep2477060348910 Rosmarinic Acid 4CL low borderline
Snep2478370353840 Rosmarinic Acid 4CL medium pass
Snep2478750355020 Rosmarinic Acid 4CL low borderline
Snep2579960374560 Rosmarinic Acid 4CL low borderline
Snep2579980374580 Rosmarinic Acid 4CL low borderline
Snep1603940003970 Rosmarinic Acid C4H low borderline
Snep1920330007330 Rosmarinic Acid C4H low borderline
Snep1928060008240 Rosmarinic Acid C4H low borderline
Snep1934040008900 Rosmarinic Acid C4H low borderline
Snep2045120011490 Rosmarinic Acid C4H low borderline
Snep2086630012960 Rosmarinic Acid C4H low borderline
Snep2188220016090 Rosmarinic Acid C4H medium pass
Snep2194550016740 Rosmarinic Acid C4H low borderline
Snep2268920021820 Rosmarinic Acid C4H low borderline
Snep2281510024220 Rosmarinic Acid C4H low borderline
Snep2304800027160 Rosmarinic Acid C4H low borderline
Snep2307460027860 Rosmarinic Acid C4H medium pass
Snep2324050030810 Rosmarinic Acid C4H low borderline
Snep2327910031930 Rosmarinic Acid C4H low borderline