PlantSME Plant secondary metabolism enzyme database

Scapania nepalensis (scapania_nepalensis)

Imported from atlas release summary for Scapania nepalensis.

1097
Candidate Protein Records
716
Pathway-Level Records
2135
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 24.44% Terpenoid pathway 23.74% Alkaloid pathway 22.77% Flavonoid pathway 11.31% Rosmarinic acid pathway 10.89% Steroid pathway 6.84%
Family Distribution
C4H 7.21% C3'H/CYP98A 6.04% 4CL 5.06% CYP76 4.82% BAHD 4.54% NMT 3.61% STR 3.37% IFS 3.33%
Other Families 62.01%
More Families (97)
POD 69 3.23% T3O 63 2.95% BR6OX2/CYP85A2 61 2.86% F3H 58 2.72% H6H 45 2.11% GS 41 1.92% IFR 40 1.87% F3'H/CYP75B 36 1.69% TRI/TRII 35 1.64% DWF4/CYP90B1 35 1.64% UGT 34 1.59% IO 31 1.45% 7DLGT 31 1.45% UFGT 31 1.45% COMT 28 1.31% PAL 27 1.26% RAS 26 1.22% CAD 25 1.17% HCT 25 1.17% FNS 24 1.12% CODM/T6ODM 22 1.03% CSE 22 1.03% TPS 21 0.98% G8O/G8H 20 0.94% T16H 20 0.94% F3'5'H/CYP75A 20 0.94% SMT1/SMT2/SMT3 19 0.89% CAS 18 0.84% CYP71 18 0.84% SGD 17 0.8% CNMT 16 0.75% PYKS 16 0.75% CPD/CYP90A1 14 0.66% BR6OX1/CYP85A1 13 0.61% LAC 12 0.56% CHS 11 0.52% MVD 11 0.52% ANR 10 0.47% ROT3/CYP90C1 10 0.47% PMT 9 0.42% LAMT 9 0.42% NCS 9 0.42% GES 8 0.37% CYP719 8 0.37% SLS 8 0.37% ANS/LDOX 8 0.37% DFR 8 0.37% CYP90D1 8 0.37% COR 7 0.33% CCR 7 0.33% CPR 7 0.33% HPPR 7 0.33% 8HGO 6 0.28% CYP80B1 6 0.28% AACT 6 0.28% TDC 5 0.23% 16OMT 5 0.23% ADC 5 0.23% CHI 5 0.23% TAT 5 0.23% CYP51G1 5 0.23% DWF7 5 0.23% DET2 5 0.23% MCT/IspD 5 0.23% FPPS 5 0.23% MVK 5 0.23% GGPPS 5 0.23% ISY 4 0.19% F5H/CYP84A 4 0.19% SQS/FDFT1 4 0.19% DXS 4 0.19% IDI 4 0.19% 7DLH 3 0.14% BBE 3 0.14% MPO 3 0.14% ODC 3 0.14% FLS 3 0.14% SMO1/SMO2 3 0.14% DXR 3 0.14% CMK/IspE 3 0.14% TYDC_DDC 2 0.09% FK 2 0.09% SQE 2 0.09% HYD1 2 0.09% DWF1 2 0.09% GPPS 2 0.09% HMGS 2 0.09% XMT_MXMT_DXMT 1 0.05% 6OMT_4OMT_SOMT 1 0.05% CCoAOMT 1 0.05% CPI1 1 0.05% DWF5 1 0.05% HDS/IspG 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% HDR/IspH 1 0.05% PMK 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 175 11 POD (56) View species results
Terpenoid pathway 170 19 BAHD (54) View species results
Alkaloid pathway 163 19 NMT (28) View species results
Flavonoid pathway 81 10 UFGT (27) View species results
Rosmarinic acid pathway 78 7 C4H (31) View species results
Steroid pathway 49 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 840 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 148 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Snep2392540073010 Flavonoid IFS low borderline
Snep2393090073930 Flavonoid IFS low borderline
Snep2393090073940 Flavonoid IFS low borderline
Snep2397870080510 Flavonoid IFS medium borderline
Snep2411680101820 Flavonoid IFS medium borderline
Snep2412550104020 Flavonoid IFS low borderline
Snep2413540105410 Flavonoid IFS low borderline
Snep2414440106830 Flavonoid IFS medium borderline
Snep2414770107370 Flavonoid IFS medium borderline
Snep2416780110720 Flavonoid IFS medium borderline
Snep2418450115020 Flavonoid IFS low borderline
Snep2418790115590 Flavonoid IFS low borderline
Snep2424890129510 Flavonoid IFS medium borderline
Snep2426210133180 Flavonoid IFS low borderline
Snep2427740136830 Flavonoid IFS low borderline
Snep2434710158010 Flavonoid IFS medium borderline
Snep2435500160180 Flavonoid IFS low borderline
Snep2436260162370 Flavonoid IFS low borderline
Snep2438220168980 Flavonoid IFS medium borderline
Snep2448460209000 Flavonoid IFS medium borderline
Snep2450120216390 Flavonoid IFS low borderline
Snep2452520228800 Flavonoid IFS low borderline
Snep2453760235030 Flavonoid IFS low borderline
Snep2453760235050 Flavonoid IFS low borderline
Snep2457780253160 Flavonoid IFS medium borderline
Snep2458940260140 Flavonoid IFS medium borderline
Snep2459050260890 Flavonoid IFS low borderline
Snep2460550268820 Flavonoid IFS low borderline
Snep2461250272680 Flavonoid IFS medium borderline
Snep2463910288660 Flavonoid IFS medium borderline
Snep2464300291950 Flavonoid IFS medium borderline
Snep2466740305350 Flavonoid IFS low borderline
Snep2468600314500 Flavonoid IFS low borderline
Snep2468820316370 Flavonoid IFS medium borderline
Snep2468820316380 Flavonoid IFS low borderline
Snep2468880316940 Flavonoid IFS medium borderline
Snep2470630325980 Flavonoid IFS medium borderline
Snep2472670333900 Flavonoid IFS low borderline
Snep2476960348590 Flavonoid IFS medium borderline
Snep2477230349730 Flavonoid IFS medium pass
Snep2477570351010 Flavonoid IFS low borderline
Snep2477570351020 Flavonoid IFS low borderline
Snep2477570351040 Flavonoid IFS low borderline
Snep2477700351850 Flavonoid IFS medium borderline
Snep2478550354270 Flavonoid IFS medium borderline
Snep2479450357300 Flavonoid IFS low borderline
Snep2687210377970 Flavonoid IFS low borderline
Snep2687220377980 Flavonoid IFS low borderline
Snep2745750380560 Flavonoid IFS low borderline
Snep2747730380620 Flavonoid IFS low borderline