Scapania nepalensis (scapania_nepalensis)
Imported from atlas release summary for Scapania nepalensis.
1097
Candidate Protein Records
716
Pathway-Level Records
2135
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2135
Family-Level Calls
C4H
7.21%
C3'H/CYP98A
6.04%
4CL
5.06%
CYP76
4.82%
BAHD
4.54%
NMT
3.61%
STR
3.37%
IFS
3.33%
Other Families
62.01%
More Families (97)
POD
69
3.23%
T3O
63
2.95%
BR6OX2/CYP85A2
61
2.86%
F3H
58
2.72%
H6H
45
2.11%
GS
41
1.92%
IFR
40
1.87%
F3'H/CYP75B
36
1.69%
TRI/TRII
35
1.64%
DWF4/CYP90B1
35
1.64%
UGT
34
1.59%
IO
31
1.45%
7DLGT
31
1.45%
UFGT
31
1.45%
COMT
28
1.31%
PAL
27
1.26%
RAS
26
1.22%
CAD
25
1.17%
HCT
25
1.17%
FNS
24
1.12%
CODM/T6ODM
22
1.03%
CSE
22
1.03%
TPS
21
0.98%
G8O/G8H
20
0.94%
T16H
20
0.94%
F3'5'H/CYP75A
20
0.94%
SMT1/SMT2/SMT3
19
0.89%
CAS
18
0.84%
CYP71
18
0.84%
SGD
17
0.8%
CNMT
16
0.75%
PYKS
16
0.75%
CPD/CYP90A1
14
0.66%
BR6OX1/CYP85A1
13
0.61%
LAC
12
0.56%
CHS
11
0.52%
MVD
11
0.52%
ANR
10
0.47%
ROT3/CYP90C1
10
0.47%
PMT
9
0.42%
LAMT
9
0.42%
NCS
9
0.42%
GES
8
0.37%
CYP719
8
0.37%
SLS
8
0.37%
ANS/LDOX
8
0.37%
DFR
8
0.37%
CYP90D1
8
0.37%
COR
7
0.33%
CCR
7
0.33%
CPR
7
0.33%
HPPR
7
0.33%
8HGO
6
0.28%
CYP80B1
6
0.28%
AACT
6
0.28%
TDC
5
0.23%
16OMT
5
0.23%
ADC
5
0.23%
CHI
5
0.23%
TAT
5
0.23%
CYP51G1
5
0.23%
DWF7
5
0.23%
DET2
5
0.23%
MCT/IspD
5
0.23%
FPPS
5
0.23%
MVK
5
0.23%
GGPPS
5
0.23%
ISY
4
0.19%
F5H/CYP84A
4
0.19%
SQS/FDFT1
4
0.19%
DXS
4
0.19%
IDI
4
0.19%
7DLH
3
0.14%
BBE
3
0.14%
MPO
3
0.14%
ODC
3
0.14%
FLS
3
0.14%
SMO1/SMO2
3
0.14%
DXR
3
0.14%
CMK/IspE
3
0.14%
TYDC_DDC
2
0.09%
FK
2
0.09%
SQE
2
0.09%
HYD1
2
0.09%
DWF1
2
0.09%
GPPS
2
0.09%
HMGS
2
0.09%
XMT_MXMT_DXMT
1
0.05%
6OMT_4OMT_SOMT
1
0.05%
CCoAOMT
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
HDS/IspG
1
0.05%
MDS/IspF
1
0.05%
HMGR
1
0.05%
HDR/IspH
1
0.05%
PMK
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 175 | 11 | POD (56) | View species results |
| Terpenoid pathway | 170 | 19 | BAHD (54) | View species results |
| Alkaloid pathway | 163 | 19 | NMT (28) | View species results |
| Flavonoid pathway | 81 | 10 | UFGT (27) | View species results |
| Rosmarinic acid pathway | 78 | 7 | C4H (31) | View species results |
| Steroid pathway | 49 | 13 | CAS (16) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 840 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 148 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Snep2477230349730 | Rosmarinic Acid | C4H | low | borderline |
| Snep2477570351020 | Rosmarinic Acid | C4H | low | borderline |
| Snep2477700351850 | Rosmarinic Acid | C4H | low | borderline |
| Snep2478550354270 | Rosmarinic Acid | C4H | medium | pass |
| Snep2479450357320 | Rosmarinic Acid | C4H | low | borderline |
| Snep2479960358130 | Rosmarinic Acid | C4H | low | borderline |
| Snep2484280367170 | Rosmarinic Acid | C4H | low | borderline |
| Snep2484280367190 | Rosmarinic Acid | C4H | low | borderline |
| Snep2485840369120 | Rosmarinic Acid | C4H | low | borderline |
| Snep2486520369830 | Rosmarinic Acid | C4H | low | borderline |
| Snep2687210377970 | Rosmarinic Acid | C4H | low | borderline |
| Snep2687220377980 | Rosmarinic Acid | C4H | low | borderline |
| Snep2835440384200 | Rosmarinic Acid | C4H | low | borderline |
| Snep2835450384210 | Rosmarinic Acid | C4H | low | borderline |
| Snep1585030001780 | Rosmarinic Acid | CPR | medium | pass |
| Snep2391340071270 | Rosmarinic Acid | CPR | medium | pass |
| Snep2403910089190 | Rosmarinic Acid | CPR | low | borderline |
| Snep2443280187360 | Rosmarinic Acid | CPR | medium | pass |
| Snep2446470200840 | Rosmarinic Acid | CPR | low | borderline |
| Snep2452940231220 | Rosmarinic Acid | CPR | low | borderline |
| Snep2480580360620 | Rosmarinic Acid | CPR | low | borderline |
| Snep2347730038510 | Rosmarinic Acid | HPPR | medium | pass |
| Snep2381430060300 | Rosmarinic Acid | HPPR | medium | pass |
| Snep2381430060310 | Rosmarinic Acid | HPPR | medium | pass |
| Snep2385360063650 | Rosmarinic Acid | HPPR | low | borderline |
| Snep2428820139790 | Rosmarinic Acid | HPPR | medium | pass |
| Snep2429500142260 | Rosmarinic Acid | HPPR | medium | pass |
| Snep2442340183930 | Rosmarinic Acid | HPPR | medium | pass |
| Snep2384730062970 | Rosmarinic Acid | PAL | high | pass |
| Snep2387560065960 | Rosmarinic Acid | PAL | high | pass |
| Snep2387560065980 | Rosmarinic Acid | PAL | high | pass |
| Snep2399330082690 | Rosmarinic Acid | PAL | high | pass |
| Snep2419330116810 | Rosmarinic Acid | PAL | high | pass |
| Snep2437550167010 | Rosmarinic Acid | PAL | medium | pass |
| Snep2437550167020 | Rosmarinic Acid | PAL | medium | pass |
| Snep2447110203060 | Rosmarinic Acid | PAL | high | pass |
| Snep2460850270530 | Rosmarinic Acid | PAL | high | pass |
| Snep2261700020930 | Rosmarinic Acid | RAS | medium | pass |
| Snep2381200060080 | Rosmarinic Acid | RAS | medium | pass |
| Snep2393130074000 | Rosmarinic Acid | RAS | medium | pass |
| Snep2393600074460 | Rosmarinic Acid | RAS | low | borderline |
| Snep2401930086660 | Rosmarinic Acid | RAS | medium | pass |
| Snep2409990098910 | Rosmarinic Acid | RAS | medium | pass |
| Snep2420100118810 | Rosmarinic Acid | RAS | low | borderline |
| Snep2428070137490 | Rosmarinic Acid | RAS | low | borderline |
| Snep2442310183910 | Rosmarinic Acid | RAS | low | borderline |
| Snep2443460187810 | Rosmarinic Acid | RAS | low | borderline |
| Snep2451430222960 | Rosmarinic Acid | RAS | low | borderline |
| Snep2452520228700 | Rosmarinic Acid | RAS | low | borderline |
| Snep2452520228710 | Rosmarinic Acid | RAS | low | borderline |