PlantSME Plant secondary metabolism enzyme database

Solanum galapagense (solanum_galapagense)

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Imported from atlas release summary for Solanum galapagense.

1658
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.4% Alkaloid pathway 20.69% Phenylpropanoid pathway 20.08% Flavonoid pathway 13.39% Rosmarinic acid pathway 10.07% Steroid pathway 5.37%
Family Distribution
C4H 7.59% C3'H/CYP98A 6.06% BAHD 5.45% UGT 4.36% CYP76 4.06% 7DLGT 4.04% 4CL 3.78% POD 3.76%
Other Families 60.9%
More Families (97)
UFGT 160 3.71% T3O 151 3.5% IFS 150 3.48% F3'H/CYP75B 114 2.65% F3H 112 2.6% DWF4/CYP90B1 100 2.32% BR6OX2/CYP85A2 96 2.23% NMT 83 1.93% CYP71 76 1.76% STR 72 1.67% CODM/T6ODM 65 1.51% H6H 63 1.46% SMT1/SMT2/SMT3 56 1.3% CAD 50 1.16% TAT 50 1.16% TPS 50 1.16% T16H 47 1.09% PAL 45 1.04% TRI/TRII 43 1.0% G8O/G8H 43 1.0% GES 41 0.95% CAS 38 0.88% LAC 37 0.86% 7DLH 36 0.84% FNS 34 0.79% CSE 34 0.79% HCT 33 0.77% IFR 32 0.74% PYKS 30 0.7% BBE 30 0.7% SLS 29 0.67% F5H/CYP84A 26 0.6% F3'5'H/CYP75A 25 0.58% GS 24 0.56% COMT 23 0.53% LAMT 22 0.51% SGD 22 0.51% IO 22 0.51% ANR 22 0.51% CYP90D1 22 0.51% PMT 20 0.46% CCR 20 0.46% RAS 20 0.46% CPD/CYP90A1 19 0.44% TYDC_DDC 18 0.42% ANS/LDOX 17 0.39% 16OMT 16 0.37% BR6OX1/CYP85A1 16 0.37% NCS 15 0.35% CYP51G1 15 0.35% 8HGO 14 0.32% MPO 12 0.28% FPPS 12 0.28% DFR 11 0.26% CCoAOMT 11 0.26% CNMT 10 0.23% COR 10 0.23% GGPPS 10 0.23% SQS/FDFT1 9 0.21% ROT3/CYP90C1 9 0.21% CYP80B1 8 0.19% CYP719 8 0.19% CHS 8 0.19% HPPR 7 0.16% CPR 7 0.16% 6OMT_4OMT_SOMT 6 0.14% DET2 6 0.14% HMGR 6 0.14% AACT 6 0.14% TDC 5 0.12% SMO1/SMO2 5 0.12% MVD 5 0.12% ISY 4 0.09% CHI 4 0.09% SQE 4 0.09% PMK 4 0.09% ADC 3 0.07% ODC 3 0.07% DWF7 3 0.07% DXS 3 0.07% HMGS 3 0.07% CYP80F1 2 0.05% FLS 2 0.05% DWF5 2 0.05% FK 2 0.05% CPI1 2 0.05% DWF1 2 0.05% HYD1 2 0.05% MVK 2 0.05% IDI 2 0.05% CMK/IspE 1 0.02% MCT/IspD 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 504 19 BAHD (175) View species results
Alkaloid pathway 343 25 7DLGT (69) View species results
Phenylpropanoid pathway 333 12 POD (156) View species results
Flavonoid pathway 222 11 UFGT (141) View species results
Rosmarinic acid pathway 167 7 C4H (68) View species results
Steroid pathway 89 12 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1777 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 288 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
solanum_galapagense_GWHPBJTJ012337 Flavonoid CHI medium pass CHI__00002__sp_A0A2U7XUH7_CHIL1_HUMLU
solanum_galapagense_GWHPBJTJ021264 Flavonoid CHI medium pass CHI__00007__sp_Q33DL3_CFI_TOBAC
solanum_galapagense_GWHPBJTJ021265 Flavonoid CHI medium pass CHI__00007__sp_Q33DL3_CFI_TOBAC
solanum_galapagense_GWHPBJTJ022704 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU