Solanum habrochaites (solanum_habrochaites)
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Imported from atlas release summary for Solanum habrochaites.
1754
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1754
Candidate Genes
C4H
7.15%
BAHD
5.95%
UGT
5.16%
C3'H/CYP98A
4.73%
7DLGT
4.71%
UFGT
4.55%
POD
3.96%
4CL
3.87%
Other Families
59.93%
More Families (98)
CYP76
151
3.54%
IFS
138
3.23%
F3H
121
2.84%
T3O
106
2.48%
DWF4/CYP90B1
90
2.11%
NMT
87
2.04%
F3'H/CYP75B
81
1.9%
STR
80
1.87%
H6H
68
1.59%
CODM/T6ODM
67
1.57%
G8O/G8H
61
1.43%
CYP71
61
1.43%
CAD
59
1.38%
TPS
59
1.38%
SMT1/SMT2/SMT3
57
1.34%
GES
55
1.29%
BR6OX2/CYP85A2
53
1.24%
TAT
52
1.22%
TRI/TRII
47
1.1%
LAC
42
0.98%
7DLH
40
0.94%
FNS
40
0.94%
CSE
38
0.89%
T16H
36
0.84%
PAL
36
0.84%
HCT
36
0.84%
CAS
36
0.84%
IFR
35
0.82%
BBE
31
0.73%
GS
29
0.68%
IO
28
0.66%
TYDC_DDC
28
0.66%
F5H/CYP84A
26
0.61%
COMT
26
0.61%
SLS
24
0.56%
16OMT
23
0.54%
F3'5'H/CYP75A
23
0.54%
RAS
23
0.54%
ANR
22
0.52%
PMT
21
0.49%
CYP90D1
21
0.49%
LAMT
20
0.47%
CCR
20
0.47%
CPD/CYP90A1
20
0.47%
CCoAOMT
19
0.45%
BR6OX1/CYP85A1
19
0.45%
SGD
18
0.42%
DFR
15
0.35%
CNMT
13
0.3%
8HGO
13
0.3%
ROT3/CYP90C1
13
0.3%
NCS
12
0.28%
ANS/LDOX
12
0.28%
FPPS
12
0.28%
GGPPS
11
0.26%
PYKS
10
0.23%
COR
10
0.23%
SQS/FDFT1
10
0.23%
CYP80B1
9
0.21%
6OMT_4OMT_SOMT
7
0.16%
MPO
7
0.16%
CYP719
7
0.16%
TDC
7
0.16%
CHS
7
0.16%
CPR
7
0.16%
CYP51G1
7
0.16%
AACT
7
0.16%
ODC
6
0.14%
HPPR
6
0.14%
SMO1/SMO2
6
0.14%
DET2
6
0.14%
ISY
5
0.12%
MVK
5
0.12%
MVD
5
0.12%
HMGR
5
0.12%
XMT_MXMT_DXMT
4
0.09%
CHI
4
0.09%
DXS
4
0.09%
HMGS
4
0.09%
ADC
2
0.05%
DWF5
2
0.05%
FK
2
0.05%
DWF1
2
0.05%
HYD1
2
0.05%
DWF7
2
0.05%
SQE
2
0.05%
IDI
2
0.05%
PMK
2
0.05%
CYP80F1
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 560 | 19 | UGT (197) | View species results |
| Alkaloid pathway | 366 | 26 | 7DLGT (78) | View species results |
| Phenylpropanoid pathway | 358 | 12 | POD (164) | View species results |
| Flavonoid pathway | 246 | 9 | UFGT (167) | View species results |
| Rosmarinic acid pathway | 143 | 7 | C4H (44) | View species results |
| Steroid pathway | 81 | 13 | SMT1/SMT2/SMT3 (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1522 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 313 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| solanum_habrochaites_GWHPBJTH001053 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH006060 | Flavonoid | C4H | medium | borderline |
| solanum_habrochaites_GWHPBJTH007061 | Flavonoid | C4H | medium | borderline |
| solanum_habrochaites_GWHPBJTH008099 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH012196 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH013600 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH014144 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH014577 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH014992 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH016928 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH019042 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH021394 | Flavonoid | C4H | medium | borderline |
| solanum_habrochaites_GWHPBJTH023138 | Flavonoid | C4H | medium | borderline |
| solanum_habrochaites_GWHPBJTH023980 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH025806 | Flavonoid | C4H | medium | borderline |
| solanum_habrochaites_GWHPBJTH027804 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH030650 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH032300 | Flavonoid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000310 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000311 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000313 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000315 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000384 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000466 | Rosmarinic Acid | C4H | medium | pass |
| solanum_habrochaites_GWHPBJTH000483 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH000541 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH001053 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH001431 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002012 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002265 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002314 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002560 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002562 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002563 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002768 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH002807 | Rosmarinic Acid | C4H | medium | pass |
| solanum_habrochaites_GWHPBJTH003824 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH003915 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004500 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004502 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004641 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004648 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004760 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004837 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH004880 | Rosmarinic Acid | C4H | medium | pass |
| solanum_habrochaites_GWHPBJTH004881 | Rosmarinic Acid | C4H | low | borderline |
| solanum_habrochaites_GWHPBJTH006058 | Rosmarinic Acid | C4H | medium | pass |
| solanum_habrochaites_GWHPBJTH006059 | Rosmarinic Acid | C4H | medium | pass |
| solanum_habrochaites_GWHPBJTH006060 | Rosmarinic Acid | C4H | medium | pass |
| solanum_habrochaites_GWHPBJTH006063 | Rosmarinic Acid | C4H | low | borderline |