PlantSME Plant secondary metabolism enzyme database

Solanum habrochaites (solanum_habrochaites)

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Imported from atlas release summary for Solanum habrochaites.

1754
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.93% Alkaloid pathway 20.87% Phenylpropanoid pathway 20.41% Flavonoid pathway 14.03% Rosmarinic acid pathway 8.15% Steroid pathway 4.62%
Family Distribution
C4H 7.15% BAHD 5.95% UGT 5.16% C3'H/CYP98A 4.73% 7DLGT 4.71% UFGT 4.55% POD 3.96% 4CL 3.87%
Other Families 59.93%
More Families (98)
CYP76 151 3.54% IFS 138 3.23% F3H 121 2.84% T3O 106 2.48% DWF4/CYP90B1 90 2.11% NMT 87 2.04% F3'H/CYP75B 81 1.9% STR 80 1.87% H6H 68 1.59% CODM/T6ODM 67 1.57% G8O/G8H 61 1.43% CYP71 61 1.43% CAD 59 1.38% TPS 59 1.38% SMT1/SMT2/SMT3 57 1.34% GES 55 1.29% BR6OX2/CYP85A2 53 1.24% TAT 52 1.22% TRI/TRII 47 1.1% LAC 42 0.98% 7DLH 40 0.94% FNS 40 0.94% CSE 38 0.89% T16H 36 0.84% PAL 36 0.84% HCT 36 0.84% CAS 36 0.84% IFR 35 0.82% BBE 31 0.73% GS 29 0.68% IO 28 0.66% TYDC_DDC 28 0.66% F5H/CYP84A 26 0.61% COMT 26 0.61% SLS 24 0.56% 16OMT 23 0.54% F3'5'H/CYP75A 23 0.54% RAS 23 0.54% ANR 22 0.52% PMT 21 0.49% CYP90D1 21 0.49% LAMT 20 0.47% CCR 20 0.47% CPD/CYP90A1 20 0.47% CCoAOMT 19 0.45% BR6OX1/CYP85A1 19 0.45% SGD 18 0.42% DFR 15 0.35% CNMT 13 0.3% 8HGO 13 0.3% ROT3/CYP90C1 13 0.3% NCS 12 0.28% ANS/LDOX 12 0.28% FPPS 12 0.28% GGPPS 11 0.26% PYKS 10 0.23% COR 10 0.23% SQS/FDFT1 10 0.23% CYP80B1 9 0.21% 6OMT_4OMT_SOMT 7 0.16% MPO 7 0.16% CYP719 7 0.16% TDC 7 0.16% CHS 7 0.16% CPR 7 0.16% CYP51G1 7 0.16% AACT 7 0.16% ODC 6 0.14% HPPR 6 0.14% SMO1/SMO2 6 0.14% DET2 6 0.14% ISY 5 0.12% MVK 5 0.12% MVD 5 0.12% HMGR 5 0.12% XMT_MXMT_DXMT 4 0.09% CHI 4 0.09% DXS 4 0.09% HMGS 4 0.09% ADC 2 0.05% DWF5 2 0.05% FK 2 0.05% DWF1 2 0.05% HYD1 2 0.05% DWF7 2 0.05% SQE 2 0.05% IDI 2 0.05% PMK 2 0.05% CYP80F1 1 0.02% FLS 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02% MCT/IspD 1 0.02% HDR/IspH 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 560 19 UGT (197) View species results
Alkaloid pathway 366 26 7DLGT (78) View species results
Phenylpropanoid pathway 358 12 POD (164) View species results
Flavonoid pathway 246 9 UFGT (167) View species results
Rosmarinic acid pathway 143 7 C4H (44) View species results
Steroid pathway 81 13 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1522 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 313 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
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Gene Pathway Family Confidence Status
solanum_habrochaites_GWHPBJTH000457 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH000477 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH001316 Alkaloid SGD low borderline
solanum_habrochaites_GWHPBJTH002123 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH005079 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH005182 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH007169 Alkaloid SGD low borderline
solanum_habrochaites_GWHPBJTH010327 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH013175 Alkaloid SGD low borderline
solanum_habrochaites_GWHPBJTH015049 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH017617 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH028266 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH028268 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH028317 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH029238 Alkaloid SGD low borderline
solanum_habrochaites_GWHPBJTH029403 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH032722 Alkaloid SGD medium pass
solanum_habrochaites_GWHPBJTH032723 Alkaloid SGD medium pass