Solanum lycopersicoides (solanum_lycopersicoides)
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Imported from atlas release summary for Solanum lycopersicoides.
2154
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2154
Candidate Genes
C4H
6.71%
C3'H/CYP98A
5.78%
BAHD
5.74%
UGT
4.52%
7DLGT
4.16%
UFGT
4.07%
CYP76
3.78%
4CL
3.57%
Other Families
61.67%
More Families (97)
POD
206
3.55%
T3O
202
3.48%
IFS
179
3.09%
F3'H/CYP75B
159
2.74%
F3H
159
2.74%
DWF4/CYP90B1
136
2.35%
NMT
124
2.14%
BR6OX2/CYP85A2
119
2.05%
CYP71
105
1.81%
CODM/T6ODM
95
1.64%
STR
94
1.62%
H6H
93
1.6%
SMT1/SMT2/SMT3
87
1.5%
CAD
72
1.24%
TPS
72
1.24%
TAT
70
1.21%
PAL
69
1.19%
TRI/TRII
65
1.12%
GES
62
1.07%
F5H/CYP84A
55
0.95%
CAS
54
0.93%
G8O/G8H
52
0.9%
LAC
50
0.86%
CSE
50
0.86%
T16H
46
0.79%
HCT
45
0.78%
COMT
43
0.74%
IO
41
0.71%
7DLH
41
0.71%
SLS
37
0.64%
F3'5'H/CYP75A
37
0.64%
GS
36
0.62%
ANR
35
0.6%
PYKS
34
0.59%
CCR
34
0.59%
16OMT
33
0.57%
CPD/CYP90A1
33
0.57%
FNS
32
0.55%
IFR
32
0.55%
BR6OX1/CYP85A1
32
0.55%
CYP51G1
31
0.53%
SGD
29
0.5%
RAS
29
0.5%
CYP90D1
29
0.5%
ANS/LDOX
27
0.47%
PMT
25
0.43%
NCS
24
0.41%
BBE
24
0.41%
8HGO
23
0.4%
LAMT
22
0.38%
TYDC_DDC
18
0.31%
MPO
17
0.29%
DFR
17
0.29%
CNMT
13
0.22%
CCoAOMT
13
0.22%
ROT3/CYP90C1
13
0.22%
FPPS
13
0.22%
COR
12
0.21%
SQS/FDFT1
10
0.17%
HMGR
9
0.16%
AACT
9
0.16%
CYP80B1
8
0.14%
XMT_MXMT_DXMT
8
0.14%
CHS
8
0.14%
CPR
8
0.14%
CYP719
7
0.12%
HPPR
7
0.12%
SQE
7
0.12%
MVD
7
0.12%
ODC
6
0.1%
ISY
5
0.09%
TDC
5
0.09%
DET2
5
0.09%
DXS
5
0.09%
GGPPS
5
0.09%
HMGS
5
0.09%
DWF5
4
0.07%
SMO1/SMO2
4
0.07%
CYP80F1
3
0.05%
CHI
3
0.05%
FLS
3
0.05%
HYD1
3
0.05%
DWF7
3
0.05%
FK
3
0.05%
IDI
3
0.05%
MVK
3
0.05%
PMK
3
0.05%
ADC
2
0.03%
6OMT_4OMT_SOMT
2
0.03%
DWF1
2
0.03%
DXR
2
0.03%
CMK/IspE
2
0.03%
HDR/IspH
2
0.03%
MDS/IspF
2
0.03%
CPI1
1
0.02%
MCT/IspD
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 619 | 19 | BAHD (228) | View species results |
| Alkaloid pathway | 454 | 24 | 7DLGT (99) | View species results |
| Phenylpropanoid pathway | 424 | 12 | POD (177) | View species results |
| Flavonoid pathway | 330 | 12 | UFGT (213) | View species results |
| Rosmarinic acid pathway | 211 | 7 | C4H (87) | View species results |
| Steroid pathway | 116 | 12 | SMT1/SMT2/SMT3 (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2308 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 407 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| solanum_lycopersicoides_Contig1540g050020.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Contig522g050010.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Contig665g050010.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Contig906g050010.1 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Contig906g050030.1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd01g067380.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd01g076590.1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd01g083510.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd02g053690.1 | Phenylpropanoid | CCR | low | borderline | CCR__00004__sp_G7JEE5_CCR2_MEDTR |
| solanum_lycopersicoides_Solyd02g073780.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd02g073830.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd02g073850.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd02g075540.1 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| solanum_lycopersicoides_Solyd02g075620.1 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| solanum_lycopersicoides_Solyd02g078800.1 | Phenylpropanoid | CCR | medium | pass | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| solanum_lycopersicoides_Solyd03g052260.1 | Phenylpropanoid | CCR | low | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd03g078540.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd04g053440.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd04g057960.1 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd04g057970.1 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd04g079720.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd05g067820.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd05g070960.1 | Phenylpropanoid | CCR | low | borderline | CCR__00009__sp_Q9SAH9_CCR2_ARATH |
| solanum_lycopersicoides_Solyd06g069970.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd08g068330.1 | Phenylpropanoid | CCR | low | borderline | CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ |
| solanum_lycopersicoides_Solyd10g054330.1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd10g054350.1 | Phenylpropanoid | CCR | low | borderline | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd10g054360.1 | Phenylpropanoid | CCR | medium | pass | CCR__00001__sp_A0A059TC02_CCR1_PETHY |
| solanum_lycopersicoides_Solyd10g056300.1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd10g056410.1 | Phenylpropanoid | CCR | medium | pass | CCR__00007__sp_Q9CA28_TKPR2_ARATH |
| solanum_lycopersicoides_Solyd11g071000.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00004__sp_G7JEE5_CCR2_MEDTR |
| solanum_lycopersicoides_Solyd12g050410.1 | Phenylpropanoid | CCR | medium | borderline | CCR__00002__sp_A0A072VDF2_CCR1_MEDTR |
| solanum_lycopersicoides_Solyd12g069980.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |
| solanum_lycopersicoides_Solyd12g070070.1 | Phenylpropanoid | CCR | low | borderline | CCR__00006__sp_Q6K9A2_CCR1_ORYSJ |