PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicoides (solanum_lycopersicoides)

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Imported from atlas release summary for Solanum lycopersicoides.

2154
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.74% Alkaloid pathway 21.08% Phenylpropanoid pathway 19.68% Flavonoid pathway 15.32% Rosmarinic acid pathway 9.8% Steroid pathway 5.39%
Family Distribution
C4H 6.71% C3'H/CYP98A 5.78% BAHD 5.74% UGT 4.52% 7DLGT 4.16% UFGT 4.07% CYP76 3.78% 4CL 3.57%
Other Families 61.67%
More Families (97)
POD 206 3.55% T3O 202 3.48% IFS 179 3.09% F3'H/CYP75B 159 2.74% F3H 159 2.74% DWF4/CYP90B1 136 2.35% NMT 124 2.14% BR6OX2/CYP85A2 119 2.05% CYP71 105 1.81% CODM/T6ODM 95 1.64% STR 94 1.62% H6H 93 1.6% SMT1/SMT2/SMT3 87 1.5% CAD 72 1.24% TPS 72 1.24% TAT 70 1.21% PAL 69 1.19% TRI/TRII 65 1.12% GES 62 1.07% F5H/CYP84A 55 0.95% CAS 54 0.93% G8O/G8H 52 0.9% LAC 50 0.86% CSE 50 0.86% T16H 46 0.79% HCT 45 0.78% COMT 43 0.74% IO 41 0.71% 7DLH 41 0.71% SLS 37 0.64% F3'5'H/CYP75A 37 0.64% GS 36 0.62% ANR 35 0.6% PYKS 34 0.59% CCR 34 0.59% 16OMT 33 0.57% CPD/CYP90A1 33 0.57% FNS 32 0.55% IFR 32 0.55% BR6OX1/CYP85A1 32 0.55% CYP51G1 31 0.53% SGD 29 0.5% RAS 29 0.5% CYP90D1 29 0.5% ANS/LDOX 27 0.47% PMT 25 0.43% NCS 24 0.41% BBE 24 0.41% 8HGO 23 0.4% LAMT 22 0.38% TYDC_DDC 18 0.31% MPO 17 0.29% DFR 17 0.29% CNMT 13 0.22% CCoAOMT 13 0.22% ROT3/CYP90C1 13 0.22% FPPS 13 0.22% COR 12 0.21% SQS/FDFT1 10 0.17% HMGR 9 0.16% AACT 9 0.16% CYP80B1 8 0.14% XMT_MXMT_DXMT 8 0.14% CHS 8 0.14% CPR 8 0.14% CYP719 7 0.12% HPPR 7 0.12% SQE 7 0.12% MVD 7 0.12% ODC 6 0.1% ISY 5 0.09% TDC 5 0.09% DET2 5 0.09% DXS 5 0.09% GGPPS 5 0.09% HMGS 5 0.09% DWF5 4 0.07% SMO1/SMO2 4 0.07% CYP80F1 3 0.05% CHI 3 0.05% FLS 3 0.05% HYD1 3 0.05% DWF7 3 0.05% FK 3 0.05% IDI 3 0.05% MVK 3 0.05% PMK 3 0.05% ADC 2 0.03% 6OMT_4OMT_SOMT 2 0.03% DWF1 2 0.03% DXR 2 0.03% CMK/IspE 2 0.03% HDR/IspH 2 0.03% MDS/IspF 2 0.03% CPI1 1 0.02% MCT/IspD 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 619 19 BAHD (228) View species results
Alkaloid pathway 454 24 7DLGT (99) View species results
Phenylpropanoid pathway 424 12 POD (177) View species results
Flavonoid pathway 330 12 UFGT (213) View species results
Rosmarinic acid pathway 211 7 C4H (87) View species results
Steroid pathway 116 12 SMT1/SMT2/SMT3 (49) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2308 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 407 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
solanum_lycopersicoides_Solyd08g066160.1 Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
solanum_lycopersicoides_Solyd08g066220.1 Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
solanum_lycopersicoides_Solyd08g066250.1 Alkaloid GES low borderline GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
solanum_lycopersicoides_Solyd09g064740.1 Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
solanum_lycopersicoides_Solyd09g073730.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
solanum_lycopersicoides_Solyd09g073970.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
solanum_lycopersicoides_Solyd10g050360.1 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
solanum_lycopersicoides_Solyd10g062490.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
solanum_lycopersicoides_Solyd11g053070.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
solanum_lycopersicoides_Solyd12g051730.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
solanum_lycopersicoides_Solyd12g058490.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
solanum_lycopersicoides_Solyd12g058500.1 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU