PlantSME Plant secondary metabolism enzyme database

Solanum rostratum (solanum_rostratum)

Imported from atlas release summary for Solanum rostratum.

1685
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.79% Alkaloid pathway 21.07% Phenylpropanoid pathway 18.99% Flavonoid pathway 15.31% Rosmarinic acid pathway 10.5% Steroid pathway 4.33%
Family Distribution
C4H 6.89% C3'H/CYP98A 6.16% BAHD 5.34% UGT 5.02% 7DLGT 4.7% UFGT 4.59% T3O 4.02% 4CL 3.93%
Other Families 59.35%
More Families (97)
POD 167 3.81% CYP76 165 3.77% IFS 143 3.26% F3H 121 2.76% F3'H/CYP75B 114 2.6% DWF4/CYP90B1 107 2.44% BR6OX2/CYP85A2 90 2.05% NMT 87 1.99% STR 77 1.76% CYP71 73 1.67% H6H 70 1.6% CODM/T6ODM 65 1.48% TAT 53 1.21% SMT1/SMT2/SMT3 52 1.19% TRI/TRII 51 1.16% CAD 48 1.1% LAC 43 0.98% GES 41 0.94% TPS 41 0.94% CSE 39 0.89% CYP90D1 36 0.82% IFR 35 0.8% T16H 33 0.75% G8O/G8H 32 0.73% BBE 32 0.73% HCT 32 0.73% CAS 32 0.73% 7DLH 30 0.68% GS 30 0.68% F3'5'H/CYP75A 28 0.64% F5H/CYP84A 28 0.64% PYKS 27 0.62% CYP51G1 27 0.62% FNS 25 0.57% COMT 25 0.57% SLS 24 0.55% PAL 24 0.55% PMT 23 0.52% IO 22 0.5% RAS 20 0.46% SGD 19 0.43% BR6OX1/CYP85A1 18 0.41% 16OMT 17 0.39% ANR 17 0.39% CCR 17 0.39% LAMT 16 0.37% CPD/CYP90A1 15 0.34% NCS 13 0.3% TYDC_DDC 12 0.27% ANS/LDOX 12 0.27% DFR 12 0.27% 8HGO 11 0.25% CNMT 11 0.25% AACT 11 0.25% FPPS 11 0.25% COR 10 0.23% CCoAOMT 10 0.23% SQS/FDFT1 10 0.23% ROT3/CYP90C1 9 0.21% CHS 8 0.18% HPPR 8 0.18% GGPPS 8 0.18% MPO 7 0.16% CPR 7 0.16% CYP719 6 0.14% 6OMT_4OMT_SOMT 5 0.11% ODC 5 0.11% ISY 5 0.11% CHI 5 0.11% DET2 5 0.11% SQE 5 0.11% MVD 5 0.11% HMGS 5 0.11% FLS 4 0.09% SMO1/SMO2 4 0.09% HMGR 4 0.09% CYP80B1 3 0.07% CYP80F1 3 0.07% DWF5 3 0.07% DWF1 3 0.07% MVK 3 0.07% IDI 3 0.07% PMK 3 0.07% ADC 2 0.05% FK 2 0.05% HYD1 2 0.05% DXS 2 0.05% CMK/IspE 2 0.05% MCT/IspD 2 0.05% XMT_MXMT_DXMT 1 0.02% TDC 1 0.02% DWF7 1 0.02% CPI1 1 0.02% HDR/IspH 1 0.02% DXR 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 502 19 UGT (197) View species results
Alkaloid pathway 355 23 7DLGT (77) View species results
Phenylpropanoid pathway 320 11 POD (140) View species results
Flavonoid pathway 258 12 UFGT (185) View species results
Rosmarinic acid pathway 177 7 C4H (83) View species results
Steroid pathway 73 12 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1754 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 286 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
solanum_rostratum_evm.model.Chr1.2171 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
solanum_rostratum_evm.model.Chr1.3746 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
solanum_rostratum_evm.model.Chr3.1280 Flavonoid CHS low borderline CHS__00005__sp_O80400_VPS_HUMLU
solanum_rostratum_evm.model.Chr3.1306 Flavonoid CHS low borderline CHS__00005__sp_O80400_VPS_HUMLU
solanum_rostratum_evm.model.Chr4.188 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
solanum_rostratum_evm.model.Chr7.2125 Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
solanum_rostratum_evm.model.Chr7.2136 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
solanum_rostratum_evm.model.Chr7.2141 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA