Solanum rostratum (solanum_rostratum)
Imported from atlas release summary for Solanum rostratum.
1685
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1685
Candidate Genes
C4H
6.89%
C3'H/CYP98A
6.16%
BAHD
5.34%
UGT
5.02%
7DLGT
4.7%
UFGT
4.59%
T3O
4.02%
4CL
3.93%
Other Families
59.35%
More Families (97)
POD
167
3.81%
CYP76
165
3.77%
IFS
143
3.26%
F3H
121
2.76%
F3'H/CYP75B
114
2.6%
DWF4/CYP90B1
107
2.44%
BR6OX2/CYP85A2
90
2.05%
NMT
87
1.99%
STR
77
1.76%
CYP71
73
1.67%
H6H
70
1.6%
CODM/T6ODM
65
1.48%
TAT
53
1.21%
SMT1/SMT2/SMT3
52
1.19%
TRI/TRII
51
1.16%
CAD
48
1.1%
LAC
43
0.98%
GES
41
0.94%
TPS
41
0.94%
CSE
39
0.89%
CYP90D1
36
0.82%
IFR
35
0.8%
T16H
33
0.75%
G8O/G8H
32
0.73%
BBE
32
0.73%
HCT
32
0.73%
CAS
32
0.73%
7DLH
30
0.68%
GS
30
0.68%
F3'5'H/CYP75A
28
0.64%
F5H/CYP84A
28
0.64%
PYKS
27
0.62%
CYP51G1
27
0.62%
FNS
25
0.57%
COMT
25
0.57%
SLS
24
0.55%
PAL
24
0.55%
PMT
23
0.52%
IO
22
0.5%
RAS
20
0.46%
SGD
19
0.43%
BR6OX1/CYP85A1
18
0.41%
16OMT
17
0.39%
ANR
17
0.39%
CCR
17
0.39%
LAMT
16
0.37%
CPD/CYP90A1
15
0.34%
NCS
13
0.3%
TYDC_DDC
12
0.27%
ANS/LDOX
12
0.27%
DFR
12
0.27%
8HGO
11
0.25%
CNMT
11
0.25%
AACT
11
0.25%
FPPS
11
0.25%
COR
10
0.23%
CCoAOMT
10
0.23%
SQS/FDFT1
10
0.23%
ROT3/CYP90C1
9
0.21%
CHS
8
0.18%
HPPR
8
0.18%
GGPPS
8
0.18%
MPO
7
0.16%
CPR
7
0.16%
CYP719
6
0.14%
6OMT_4OMT_SOMT
5
0.11%
ODC
5
0.11%
ISY
5
0.11%
CHI
5
0.11%
DET2
5
0.11%
SQE
5
0.11%
MVD
5
0.11%
HMGS
5
0.11%
FLS
4
0.09%
SMO1/SMO2
4
0.09%
HMGR
4
0.09%
CYP80B1
3
0.07%
CYP80F1
3
0.07%
DWF5
3
0.07%
DWF1
3
0.07%
MVK
3
0.07%
IDI
3
0.07%
PMK
3
0.07%
ADC
2
0.05%
FK
2
0.05%
HYD1
2
0.05%
DXS
2
0.05%
CMK/IspE
2
0.05%
MCT/IspD
2
0.05%
XMT_MXMT_DXMT
1
0.02%
TDC
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 502 | 19 | UGT (197) | View species results |
| Alkaloid pathway | 355 | 23 | 7DLGT (77) | View species results |
| Phenylpropanoid pathway | 320 | 11 | POD (140) | View species results |
| Flavonoid pathway | 258 | 12 | UFGT (185) | View species results |
| Rosmarinic acid pathway | 177 | 7 | C4H (83) | View species results |
| Steroid pathway | 73 | 12 | SMT1/SMT2/SMT3 (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1754 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 286 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| solanum_rostratum_evm.model.Chr1.1133 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr1.1671 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr1.1989 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr1.2492 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr1.2567 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr1.2570 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr1.2785 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr1.3614 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr10.1421 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr10.1444 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.1445 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.1451 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.1452 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.1539 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.1809 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.2444 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.416 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr10.8 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr11.2291 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr12.1080 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.1083 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.1084 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.1085 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.1210 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.1211 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.1212 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.2 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr12.2476 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.2517 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr12.332 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr2.1538 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr2.194 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr3.1196 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr3.1213 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr3.1215 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr3.1216 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr3.160 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr3.2099 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr3.630 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr4.578 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr4.88 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr5.1498 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr5.2560 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr6.1106 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr6.1107 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr6.1395 | Rosmarinic Acid | 4CL | low | borderline |
| solanum_rostratum_evm.model.Chr6.29 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr7.105 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr7.333 | Rosmarinic Acid | 4CL | medium | pass |
| solanum_rostratum_evm.model.Chr7.895 | Rosmarinic Acid | 4CL | low | borderline |